miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26637 5' -51.6 NC_005808.1 + 330 0.66 0.833401
Target:  5'- gUC-AGGCUGGCGGUgGCGucGCGCa- -3'
miRNA:   3'- gAGuUUCGGCCGUUAaUGCu-CGCGcc -5'
26637 5' -51.6 NC_005808.1 + 882 0.67 0.773841
Target:  5'- -cCGAcGuUCGGCAAggGCuGGGCGCGGc -3'
miRNA:   3'- gaGUUuC-GGCCGUUaaUG-CUCGCGCC- -5'
26637 5' -51.6 NC_005808.1 + 1706 0.71 0.583201
Target:  5'- uUCGccguGGGCCGGCGugccgGCGAGgGCGu -3'
miRNA:   3'- gAGU----UUCGGCCGUuaa--UGCUCgCGCc -5'
26637 5' -51.6 NC_005808.1 + 2627 1.11 0.001338
Target:  5'- aCUCAAAGCCGGCAAUUACGAGCGCGGc -3'
miRNA:   3'- -GAGUUUCGGCCGUUAAUGCUCGCGCC- -5'
26637 5' -51.6 NC_005808.1 + 4032 0.66 0.823983
Target:  5'- gUCAu-GCCGcGCGGgu-CGAGCGCa- -3'
miRNA:   3'- gAGUuuCGGC-CGUUaauGCUCGCGcc -5'
26637 5' -51.6 NC_005808.1 + 4857 0.67 0.794461
Target:  5'- -gCAGcgccAGCCGGCGugcuggGCGcAGUGUGGg -3'
miRNA:   3'- gaGUU----UCGGCCGUuaa---UGC-UCGCGCC- -5'
26637 5' -51.6 NC_005808.1 + 5272 0.7 0.62892
Target:  5'- cCUCGAcgugggcacgguAGCCGGCAAUaucgACGAcGUGCaGGc -3'
miRNA:   3'- -GAGUU------------UCGGCCGUUAa---UGCU-CGCG-CC- -5'
26637 5' -51.6 NC_005808.1 + 6625 0.66 0.860236
Target:  5'- cCUCAAGGaugcgcugacgcCUGGCGAUU-CGGGCGaCGa -3'
miRNA:   3'- -GAGUUUC------------GGCCGUUAAuGCUCGC-GCc -5'
26637 5' -51.6 NC_005808.1 + 7082 0.69 0.648404
Target:  5'- aUCAAcGCCaaguccucguucauGGCGAau-CGGGCGCGGa -3'
miRNA:   3'- gAGUUuCGG--------------CCGUUaauGCUCGCGCC- -5'
26637 5' -51.6 NC_005808.1 + 7705 0.68 0.719738
Target:  5'- --aGGAGCCGGCGuggguCGAGcCGCGc -3'
miRNA:   3'- gagUUUCGGCCGUuaau-GCUC-GCGCc -5'
26637 5' -51.6 NC_005808.1 + 8065 0.71 0.583201
Target:  5'- uUCGu-GCguuCGGCAA--ACGAGCGCGGc -3'
miRNA:   3'- gAGUuuCG---GCCGUUaaUGCUCGCGCC- -5'
26637 5' -51.6 NC_005808.1 + 8124 0.68 0.763287
Target:  5'- -gCGcGGCCGGCGuugGUUGUGGGCguGCGGg -3'
miRNA:   3'- gaGUuUCGGCCGU---UAAUGCUCG--CGCC- -5'
26637 5' -51.6 NC_005808.1 + 9726 0.67 0.81337
Target:  5'- cCUCGAAGCCgcgGGCGAacUGCucgugguGGGCGCGc -3'
miRNA:   3'- -GAGUUUCGG---CCGUUa-AUG-------CUCGCGCc -5'
26637 5' -51.6 NC_005808.1 + 9846 0.7 0.640384
Target:  5'- cCUCGGuuUCGGCGucgAUGAGCGUGGc -3'
miRNA:   3'- -GAGUUucGGCCGUuaaUGCUCGCGCC- -5'
26637 5' -51.6 NC_005808.1 + 10937 0.7 0.62892
Target:  5'- -gCAGGGCCucgGGCAGUUGCGcGGCGacagcCGGg -3'
miRNA:   3'- gaGUUUCGG---CCGUUAAUGC-UCGC-----GCC- -5'
26637 5' -51.6 NC_005808.1 + 12993 0.67 0.784237
Target:  5'- --aGAAGCUGacuaGC-GUUAUGGGCGCGGc -3'
miRNA:   3'- gagUUUCGGC----CGuUAAUGCUCGCGCC- -5'
26637 5' -51.6 NC_005808.1 + 13251 0.72 0.51611
Target:  5'- -aCAAcGCCGGcCAAggGCGcccAGCGCGGc -3'
miRNA:   3'- gaGUUuCGGCC-GUUaaUGC---UCGCGCC- -5'
26637 5' -51.6 NC_005808.1 + 13308 0.66 0.851537
Target:  5'- -cCGGGGCCGGCGuuguagGCG-GCGUaGGc -3'
miRNA:   3'- gaGUUUCGGCCGUuaa---UGCuCGCG-CC- -5'
26637 5' -51.6 NC_005808.1 + 13601 0.69 0.697347
Target:  5'- gUCAGgcGGCCGaCAGUU-CG-GCGCGGa -3'
miRNA:   3'- gAGUU--UCGGCcGUUAAuGCuCGCGCC- -5'
26637 5' -51.6 NC_005808.1 + 14189 0.71 0.549338
Target:  5'- -gCGAAGCCGGUguccuugucauaGGUcagGCGcAGCGCGGc -3'
miRNA:   3'- gaGUUUCGGCCG------------UUAa--UGC-UCGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.