miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26637 5' -51.6 NC_005808.1 + 42422 0.69 0.67468
Target:  5'- -gUAGGGCCGGCGGUaGCGAauccccagGCGCu- -3'
miRNA:   3'- gaGUUUCGGCCGUUAaUGCU--------CGCGcc -5'
26637 5' -51.6 NC_005808.1 + 41681 0.67 0.814346
Target:  5'- -cCAAGGCaGGC---UACGAaaGCGCGGu -3'
miRNA:   3'- gaGUUUCGgCCGuuaAUGCU--CGCGCC- -5'
26637 5' -51.6 NC_005808.1 + 40906 0.69 0.663276
Target:  5'- gUCAuGGCCGGCc--UGCGccuGGCGCGu -3'
miRNA:   3'- gAGUuUCGGCCGuuaAUGC---UCGCGCc -5'
26637 5' -51.6 NC_005808.1 + 40413 0.71 0.538181
Target:  5'- -cCuuGGCCGGCAGUU-CGAcGCGCa- -3'
miRNA:   3'- gaGuuUCGGCCGUUAAuGCU-CGCGcc -5'
26637 5' -51.6 NC_005808.1 + 40366 0.67 0.784237
Target:  5'- -cCAAGGcCCGGCGuUUAUaccgcgacaugGAGCGCGa -3'
miRNA:   3'- gaGUUUC-GGCCGUuAAUG-----------CUCGCGCc -5'
26637 5' -51.6 NC_005808.1 + 39945 0.66 0.851537
Target:  5'- -aCAcguuGGCCGGacgcu-UGAGCGCGGc -3'
miRNA:   3'- gaGUu---UCGGCCguuaauGCUCGCGCC- -5'
26637 5' -51.6 NC_005808.1 + 38629 0.79 0.204781
Target:  5'- uUCAAAGCCGGCcgcgGCGAGCGgcaGGc -3'
miRNA:   3'- gAGUUUCGGCCGuuaaUGCUCGCg--CC- -5'
26637 5' -51.6 NC_005808.1 + 38477 0.66 0.860236
Target:  5'- cCUCGAuGGCgGGCAuGUUggccGCGAGCacgucGCGGc -3'
miRNA:   3'- -GAGUU-UCGgCCGU-UAA----UGCUCG-----CGCC- -5'
26637 5' -51.6 NC_005808.1 + 38348 0.66 0.832469
Target:  5'- -aCAGcuuGCCGGCGucauccaGUUGCGGGCuGgGGu -3'
miRNA:   3'- gaGUUu--CGGCCGU-------UAAUGCUCG-CgCC- -5'
26637 5' -51.6 NC_005808.1 + 38206 0.69 0.686041
Target:  5'- gCUCAAGGcCCGGCGcg-ACG-GCGCc- -3'
miRNA:   3'- -GAGUUUC-GGCCGUuaaUGCuCGCGcc -5'
26637 5' -51.6 NC_005808.1 + 37352 0.67 0.784237
Target:  5'- gUCGAGGCCGuaGGccGCGAGCacGUGGc -3'
miRNA:   3'- gAGUUUCGGCcgUUaaUGCUCG--CGCC- -5'
26637 5' -51.6 NC_005808.1 + 37088 0.71 0.548219
Target:  5'- gUCGAGGCCGGCAuacuccacgaAUUugGcccacucGGCGgGGu -3'
miRNA:   3'- gAGUUUCGGCCGU----------UAAugC-------UCGCgCC- -5'
26637 5' -51.6 NC_005808.1 + 36581 0.69 0.697347
Target:  5'- cCUCGAAGUCGu------CGAGCGCGGc -3'
miRNA:   3'- -GAGUUUCGGCcguuaauGCUCGCGCC- -5'
26637 5' -51.6 NC_005808.1 + 35346 0.67 0.794461
Target:  5'- -aCAAGGCCGGCGAcauCGGcccGCGCc- -3'
miRNA:   3'- gaGUUUCGGCCGUUaauGCU---CGCGcc -5'
26637 5' -51.6 NC_005808.1 + 34867 0.66 0.860236
Target:  5'- -aCAgcAAGCCGGCcgc--CGAGCGUGc -3'
miRNA:   3'- gaGU--UUCGGCCGuuaauGCUCGCGCc -5'
26637 5' -51.6 NC_005808.1 + 34213 0.69 0.686041
Target:  5'- -aCGuGGgCGGCGAUUcucgaagauuCGAGCGCGGc -3'
miRNA:   3'- gaGUuUCgGCCGUUAAu---------GCUCGCGCC- -5'
26637 5' -51.6 NC_005808.1 + 34117 0.67 0.814346
Target:  5'- gCUCGAcAGCCGcGcCGAUgGCGGGCaGCGa -3'
miRNA:   3'- -GAGUU-UCGGC-C-GUUAaUGCUCG-CGCc -5'
26637 5' -51.6 NC_005808.1 + 32594 0.78 0.244002
Target:  5'- aUCcuGGCCGGCAucaccagccugcACGGGCGCGGa -3'
miRNA:   3'- gAGuuUCGGCCGUuaa---------UGCUCGCGCC- -5'
26637 5' -51.6 NC_005808.1 + 32181 0.68 0.708583
Target:  5'- gUCGAGGUCGGCAGcgGCcAGgGCGu -3'
miRNA:   3'- gAGUUUCGGCCGUUaaUGcUCgCGCc -5'
26637 5' -51.6 NC_005808.1 + 32135 0.67 0.801509
Target:  5'- -gCGGGGCCGaugagcauggcgucGCAuaguugUGCGAGCGCGc -3'
miRNA:   3'- gaGUUUCGGC--------------CGUua----AUGCUCGCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.