miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26637 5' -51.6 NC_005808.1 + 31100 0.82 0.12992
Target:  5'- cCUCGgugcAGGCCGGCGAguggUGCGAGauaGCGGg -3'
miRNA:   3'- -GAGU----UUCGGCCGUUa---AUGCUCg--CGCC- -5'
26637 5' -51.6 NC_005808.1 + 9726 0.67 0.81337
Target:  5'- cCUCGAAGCCgcgGGCGAacUGCucgugguGGGCGCGc -3'
miRNA:   3'- -GAGUUUCGG---CCGUUa-AUG-------CUCGCGCc -5'
26637 5' -51.6 NC_005808.1 + 29256 0.67 0.804501
Target:  5'- aCUCAuaAGGCCGGCcggUGuCGGG-GUGGa -3'
miRNA:   3'- -GAGU--UUCGGCCGuuaAU-GCUCgCGCC- -5'
26637 5' -51.6 NC_005808.1 + 35346 0.67 0.794461
Target:  5'- -aCAAGGCCGGCGAcauCGGcccGCGCc- -3'
miRNA:   3'- gaGUUUCGGCCGUUaauGCU---CGCGcc -5'
26637 5' -51.6 NC_005808.1 + 20309 0.67 0.794461
Target:  5'- gCUCGGcGGCCGGU---UGCGA-UGCGGg -3'
miRNA:   3'- -GAGUU-UCGGCCGuuaAUGCUcGCGCC- -5'
26637 5' -51.6 NC_005808.1 + 40366 0.67 0.784237
Target:  5'- -cCAAGGcCCGGCGuUUAUaccgcgacaugGAGCGCGa -3'
miRNA:   3'- gaGUUUC-GGCCGUuAAUG-----------CUCGCGCc -5'
26637 5' -51.6 NC_005808.1 + 8124 0.68 0.763287
Target:  5'- -gCGcGGCCGGCGuugGUUGUGGGCguGCGGg -3'
miRNA:   3'- gaGUuUCGGCCGU---UAAUGCUCG--CGCC- -5'
26637 5' -51.6 NC_005808.1 + 21808 0.68 0.752586
Target:  5'- -gCGGAcaCCGGCAGUUGC-AGCgGCGGg -3'
miRNA:   3'- gaGUUUc-GGCCGUUAAUGcUCG-CGCC- -5'
26637 5' -51.6 NC_005808.1 + 34213 0.69 0.686041
Target:  5'- -aCGuGGgCGGCGAUUcucgaagauuCGAGCGCGGc -3'
miRNA:   3'- gaGUuUCgGCCGUUAAu---------GCUCGCGCC- -5'
26637 5' -51.6 NC_005808.1 + 38206 0.69 0.686041
Target:  5'- gCUCAAGGcCCGGCGcg-ACG-GCGCc- -3'
miRNA:   3'- -GAGUUUC-GGCCGUuaaUGCuCGCGcc -5'
26637 5' -51.6 NC_005808.1 + 9846 0.7 0.640384
Target:  5'- cCUCGGuuUCGGCGucgAUGAGCGUGGc -3'
miRNA:   3'- -GAGUUucGGCCGUuaaUGCUCGCGCC- -5'
26637 5' -51.6 NC_005808.1 + 10937 0.7 0.62892
Target:  5'- -gCAGGGCCucgGGCAGUUGCGcGGCGacagcCGGg -3'
miRNA:   3'- gaGUUUCGG---CCGUUAAUGC-UCGC-----GCC- -5'
26637 5' -51.6 NC_005808.1 + 30414 0.7 0.594589
Target:  5'- gCUUuc-GCuCGGCAuggcgAUGAGCGCGGg -3'
miRNA:   3'- -GAGuuuCG-GCCGUuaa--UGCUCGCGCC- -5'
26637 5' -51.6 NC_005808.1 + 1706 0.71 0.583201
Target:  5'- uUCGccguGGGCCGGCGugccgGCGAGgGCGu -3'
miRNA:   3'- gAGU----UUCGGCCGUuaa--UGCUCgCGCc -5'
26637 5' -51.6 NC_005808.1 + 28664 0.71 0.549338
Target:  5'- aUCGGuGCCGGCGGccuCGccAGCGCGGc -3'
miRNA:   3'- gAGUUuCGGCCGUUaauGC--UCGCGCC- -5'
26637 5' -51.6 NC_005808.1 + 14189 0.71 0.549338
Target:  5'- -gCGAAGCCGGUguccuugucauaGGUcagGCGcAGCGCGGc -3'
miRNA:   3'- gaGUUUCGGCCG------------UUAa--UGC-UCGCGCC- -5'
26637 5' -51.6 NC_005808.1 + 23500 0.72 0.483721
Target:  5'- uCUCGAccuG-CGGCAGUUccGCGAGCGCGc -3'
miRNA:   3'- -GAGUUu--CgGCCGUUAA--UGCUCGCGCc -5'
26637 5' -51.6 NC_005808.1 + 26041 0.75 0.356532
Target:  5'- aUCAAAGCCcGCGcg-GCGGGCGCGc -3'
miRNA:   3'- gAGUUUCGGcCGUuaaUGCUCGCGCc -5'
26637 5' -51.6 NC_005808.1 + 17288 0.81 0.163539
Target:  5'- -aCGAAGCCGGCGcc-GCGGGCGCGc -3'
miRNA:   3'- gaGUUUCGGCCGUuaaUGCUCGCGCc -5'
26637 5' -51.6 NC_005808.1 + 23566 0.83 0.10586
Target:  5'- -aCAucGCCGGCAggUGCGGGCGgGGg -3'
miRNA:   3'- gaGUuuCGGCCGUuaAUGCUCGCgCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.