miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26639 5' -65 NC_005808.1 + 9390 0.66 0.2253
Target:  5'- -gCCGCCC-GCcGCGC-CGACgUGCGc -3'
miRNA:   3'- aaGGCGGGcCGaCGCGaGCUGgGCGC- -5'
26639 5' -65 NC_005808.1 + 28303 0.66 0.2253
Target:  5'- ---aGCCUGGC-GCaGUcCGACCCGCGc -3'
miRNA:   3'- aaggCGGGCCGaCG-CGaGCUGGGCGC- -5'
26639 5' -65 NC_005808.1 + 41872 0.66 0.2253
Target:  5'- aUCCGCCag---GCGCUCGACuuggCCGUGg -3'
miRNA:   3'- aAGGCGGgccgaCGCGAGCUG----GGCGC- -5'
26639 5' -65 NC_005808.1 + 9282 0.66 0.221909
Target:  5'- -cCCGguacaCCGGCUGCGCauugacuuccucggCGACCUgGCGg -3'
miRNA:   3'- aaGGCg----GGCCGACGCGa-------------GCUGGG-CGC- -5'
26639 5' -65 NC_005808.1 + 36082 0.66 0.219673
Target:  5'- aUCCGCCUcggccagggGGCUGCGgUCuuugucgauGACCaGCGg -3'
miRNA:   3'- aAGGCGGG---------CCGACGCgAG---------CUGGgCGC- -5'
26639 5' -65 NC_005808.1 + 23821 0.66 0.219673
Target:  5'- aUCgGCCCGGUgGCGC-CGGCauggCGCu -3'
miRNA:   3'- aAGgCGGGCCGaCGCGaGCUGg---GCGc -5'
26639 5' -65 NC_005808.1 + 36329 0.66 0.214167
Target:  5'- gUUCCGCCCcaGCcaaaGCGCcCGGCCCGa- -3'
miRNA:   3'- -AAGGCGGGc-CGa---CGCGaGCUGGGCgc -5'
26639 5' -65 NC_005808.1 + 18120 0.66 0.20878
Target:  5'- -gCCGUCCGGUacgucgaacuUGuCGCcCGGCUCGCGc -3'
miRNA:   3'- aaGGCGGGCCG----------AC-GCGaGCUGGGCGC- -5'
26639 5' -65 NC_005808.1 + 32787 0.66 0.20351
Target:  5'- gUCCGCCCucGGCaccuCGCUgGugCUGCGc -3'
miRNA:   3'- aAGGCGGG--CCGac--GCGAgCugGGCGC- -5'
26639 5' -65 NC_005808.1 + 27489 0.67 0.193315
Target:  5'- -gCCGCCgGGCgcgGUGCgccaGGCgCGCGa -3'
miRNA:   3'- aaGGCGGgCCGa--CGCGag--CUGgGCGC- -5'
26639 5' -65 NC_005808.1 + 257 0.67 0.188388
Target:  5'- -gUCGCCCGGCaGCGUgaCGguGCCCaGCGa -3'
miRNA:   3'- aaGGCGGGCCGaCGCGa-GC--UGGG-CGC- -5'
26639 5' -65 NC_005808.1 + 11660 0.67 0.188388
Target:  5'- -gCUGCCCGGCgGCcaGCcggCGGCCCuggGCGg -3'
miRNA:   3'- aaGGCGGGCCGaCG--CGa--GCUGGG---CGC- -5'
26639 5' -65 NC_005808.1 + 24475 0.67 0.174264
Target:  5'- aUCgGgCCGGCUGCGCUUcuucaACuuGCGc -3'
miRNA:   3'- aAGgCgGGCCGACGCGAGc----UGggCGC- -5'
26639 5' -65 NC_005808.1 + 14885 0.67 0.169769
Target:  5'- -gUUGCCCGGCuuucagggucUGCGCggCGAUCUGCu -3'
miRNA:   3'- aaGGCGGGCCG----------ACGCGa-GCUGGGCGc -5'
26639 5' -65 NC_005808.1 + 12723 0.67 0.169769
Target:  5'- -gUCGCCCGGCccguugGUGCUggGugCCGCGc -3'
miRNA:   3'- aaGGCGGGCCGa-----CGCGAg-CugGGCGC- -5'
26639 5' -65 NC_005808.1 + 20608 0.68 0.165379
Target:  5'- cUUCGCCaGGCgGCGUcgcaggucggugUCGGCCUGCGc -3'
miRNA:   3'- aAGGCGGgCCGaCGCG------------AGCUGGGCGC- -5'
26639 5' -65 NC_005808.1 + 10749 0.68 0.165379
Target:  5'- -cUCGCCaagGGC-GCGCUCGacuucgGCCCGCa -3'
miRNA:   3'- aaGGCGGg--CCGaCGCGAGC------UGGGCGc -5'
26639 5' -65 NC_005808.1 + 35330 0.68 0.162794
Target:  5'- -aCCGCCgagaagcugcacaaGGCcgGCGacaUCGGCCCGCGc -3'
miRNA:   3'- aaGGCGGg-------------CCGa-CGCg--AGCUGGGCGC- -5'
26639 5' -65 NC_005808.1 + 15463 0.68 0.161091
Target:  5'- -gUCGUCCGGCaucuuCGC-CGGCCCGCa -3'
miRNA:   3'- aaGGCGGGCCGac---GCGaGCUGGGCGc -5'
26639 5' -65 NC_005808.1 + 39859 0.68 0.148822
Target:  5'- --aCGCCCGaGCaGCGC-CGGgCCGCGc -3'
miRNA:   3'- aagGCGGGC-CGaCGCGaGCUgGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.