Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26639 | 5' | -65 | NC_005808.1 | + | 38226 | 0.73 | 0.06574 |
Target: 5'- --gCGCCUGGCUGCGCaUCcGCCUGCc -3' miRNA: 3'- aagGCGGGCCGACGCG-AGcUGGGCGc -5' |
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26639 | 5' | -65 | NC_005808.1 | + | 41872 | 0.66 | 0.2253 |
Target: 5'- aUCCGCCag---GCGCUCGACuuggCCGUGg -3' miRNA: 3'- aAGGCGGgccgaCGCGAGCUG----GGCGC- -5' |
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26639 | 5' | -65 | NC_005808.1 | + | 9282 | 0.66 | 0.221909 |
Target: 5'- -cCCGguacaCCGGCUGCGCauugacuuccucggCGACCUgGCGg -3' miRNA: 3'- aaGGCg----GGCCGACGCGa-------------GCUGGG-CGC- -5' |
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26639 | 5' | -65 | NC_005808.1 | + | 18120 | 0.66 | 0.20878 |
Target: 5'- -gCCGUCCGGUacgucgaacuUGuCGCcCGGCUCGCGc -3' miRNA: 3'- aaGGCGGGCCG----------AC-GCGaGCUGGGCGC- -5' |
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26639 | 5' | -65 | NC_005808.1 | + | 32787 | 0.66 | 0.20351 |
Target: 5'- gUCCGCCCucGGCaccuCGCUgGugCUGCGc -3' miRNA: 3'- aAGGCGGG--CCGac--GCGAgCugGGCGC- -5' |
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26639 | 5' | -65 | NC_005808.1 | + | 12723 | 0.67 | 0.169769 |
Target: 5'- -gUCGCCCGGCccguugGUGCUggGugCCGCGc -3' miRNA: 3'- aaGGCGGGCCGa-----CGCGAg-CugGGCGC- -5' |
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26639 | 5' | -65 | NC_005808.1 | + | 14885 | 0.67 | 0.169769 |
Target: 5'- -gUUGCCCGGCuuucagggucUGCGCggCGAUCUGCu -3' miRNA: 3'- aaGGCGGGCCG----------ACGCGa-GCUGGGCGc -5' |
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26639 | 5' | -65 | NC_005808.1 | + | 10749 | 0.68 | 0.165379 |
Target: 5'- -cUCGCCaagGGC-GCGCUCGacuucgGCCCGCa -3' miRNA: 3'- aaGGCGGg--CCGaCGCGAGC------UGGGCGc -5' |
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26639 | 5' | -65 | NC_005808.1 | + | 20608 | 0.68 | 0.165379 |
Target: 5'- cUUCGCCaGGCgGCGUcgcaggucggugUCGGCCUGCGc -3' miRNA: 3'- aAGGCGGgCCGaCGCG------------AGCUGGGCGC- -5' |
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26639 | 5' | -65 | NC_005808.1 | + | 12903 | 0.71 | 0.084319 |
Target: 5'- -gUCGCCUuuGGCgaUGCGCUCGGCCgCGCc -3' miRNA: 3'- aaGGCGGG--CCG--ACGCGAGCUGG-GCGc -5' |
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26639 | 5' | -65 | NC_005808.1 | + | 36858 | 0.7 | 0.099385 |
Target: 5'- -gCUGCCCGGC-GCGCUgggCGAUCUGUGc -3' miRNA: 3'- aaGGCGGGCCGaCGCGA---GCUGGGCGC- -5' |
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26639 | 5' | -65 | NC_005808.1 | + | 24136 | 0.7 | 0.113845 |
Target: 5'- gUCCaG-CCGGCUGCGCgccUGGCCCaGCGc -3' miRNA: 3'- aAGG-CgGGCCGACGCGa--GCUGGG-CGC- -5' |
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26639 | 5' | -65 | NC_005808.1 | + | 15712 | 0.69 | 0.120163 |
Target: 5'- gUCCGCCUgggcaucgaacuGGCgcgaggccaUGCGCUCGACauaCCGCa -3' miRNA: 3'- aAGGCGGG------------CCG---------ACGCGAGCUG---GGCGc -5' |
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26639 | 5' | -65 | NC_005808.1 | + | 39859 | 0.68 | 0.148822 |
Target: 5'- --aCGCCCGaGCaGCGC-CGGgCCGCGc -3' miRNA: 3'- aagGCGGGC-CGaCGCGaGCUgGGCGC- -5' |
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26639 | 5' | -65 | NC_005808.1 | + | 35330 | 0.68 | 0.162794 |
Target: 5'- -aCCGCCgagaagcugcacaaGGCcgGCGacaUCGGCCCGCGc -3' miRNA: 3'- aaGGCGGg-------------CCGa-CGCg--AGCUGGGCGC- -5' |
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26639 | 5' | -65 | NC_005808.1 | + | 9390 | 0.66 | 0.2253 |
Target: 5'- -gCCGCCC-GCcGCGC-CGACgUGCGc -3' miRNA: 3'- aaGGCGGGcCGaCGCGaGCUGgGCGC- -5' |
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26639 | 5' | -65 | NC_005808.1 | + | 35127 | 0.76 | 0.039713 |
Target: 5'- gUgCGCUCGGCggcGUGCUCGAUCUGCGg -3' miRNA: 3'- aAgGCGGGCCGa--CGCGAGCUGGGCGC- -5' |
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26639 | 5' | -65 | NC_005808.1 | + | 31311 | 0.71 | 0.091558 |
Target: 5'- -gUCGCCCGGCUcGUaGCUgGGCCgCGCGc -3' miRNA: 3'- aaGGCGGGCCGA-CG-CGAgCUGG-GCGC- -5' |
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26639 | 5' | -65 | NC_005808.1 | + | 42301 | 0.68 | 0.141122 |
Target: 5'- -aCCaUCCGGgUGUGCUUGGCCUGCc -3' miRNA: 3'- aaGGcGGGCCgACGCGAGCUGGGCGc -5' |
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26639 | 5' | -65 | NC_005808.1 | + | 10272 | 0.68 | 0.148822 |
Target: 5'- aUCCGCCgaccaucgggcCGGCgUGCGCUUGACgUGgGa -3' miRNA: 3'- aAGGCGG-----------GCCG-ACGCGAGCUGgGCgC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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