miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26640 5' -54.9 NC_005808.1 + 4199 1.09 0.000656
Target:  5'- cUUCCACUAUGCGCCGGGAAGCAACGCu -3'
miRNA:   3'- -AAGGUGAUACGCGGCCCUUCGUUGCG- -5'
26640 5' -54.9 NC_005808.1 + 6729 0.7 0.371878
Target:  5'- -gCCGCU--GCGCUGGGccGCcGCGCu -3'
miRNA:   3'- aaGGUGAuaCGCGGCCCuuCGuUGCG- -5'
26640 5' -54.9 NC_005808.1 + 6805 0.66 0.646586
Target:  5'- uUUCCGCUAUugaGCGCgGcGGcc-CAGCGCa -3'
miRNA:   3'- -AAGGUGAUA---CGCGgC-CCuucGUUGCG- -5'
26640 5' -54.9 NC_005808.1 + 8230 0.67 0.567185
Target:  5'- aUCCggGCgcacGCGCaGGGAcGCAGCGCc -3'
miRNA:   3'- aAGG--UGaua-CGCGgCCCUuCGUUGCG- -5'
26640 5' -54.9 NC_005808.1 + 8991 0.67 0.578434
Target:  5'- uUUCCuCgccGCGCgGGGGcgcuuccagcaGGCGGCGCa -3'
miRNA:   3'- -AAGGuGauaCGCGgCCCU-----------UCGUUGCG- -5'
26640 5' -54.9 NC_005808.1 + 9383 0.68 0.490469
Target:  5'- -gCCGCgccgacGUGCGCCGccaggucgccgaGGAAGuCAAUGCg -3'
miRNA:   3'- aaGGUGa-----UACGCGGC------------CCUUC-GUUGCG- -5'
26640 5' -54.9 NC_005808.1 + 9947 0.69 0.428764
Target:  5'- -gCCACgc-GCcugGCCGaGAAGCAGCGCg -3'
miRNA:   3'- aaGGUGauaCG---CGGCcCUUCGUUGCG- -5'
26640 5' -54.9 NC_005808.1 + 11437 0.69 0.448836
Target:  5'- -gCCACcgagGUGCCGGGcGAGCAGguCGCc -3'
miRNA:   3'- aaGGUGaua-CGCGGCCC-UUCGUU--GCG- -5'
26640 5' -54.9 NC_005808.1 + 12156 0.69 0.459065
Target:  5'- cUUCCGCguagGCGUCGGGGucAGUguccGAUGCg -3'
miRNA:   3'- -AAGGUGaua-CGCGGCCCU--UCG----UUGCG- -5'
26640 5' -54.9 NC_005808.1 + 12294 0.68 0.488344
Target:  5'- -gCCGCUguugccgGUGUGCUgcgucccgaccagGGGcAGGCAGCGCg -3'
miRNA:   3'- aaGGUGA-------UACGCGG-------------CCC-UUCGUUGCG- -5'
26640 5' -54.9 NC_005808.1 + 14695 0.68 0.489406
Target:  5'- aUCUGCgcaccgGCGCCGgaagcauGGAAGCcGACGCa -3'
miRNA:   3'- aAGGUGaua---CGCGGC-------CCUUCG-UUGCG- -5'
26640 5' -54.9 NC_005808.1 + 16896 0.68 0.51195
Target:  5'- aUCCgaACUAUGCGCCGcGuGAAcuGCGcCGCc -3'
miRNA:   3'- aAGG--UGAUACGCGGC-C-CUU--CGUuGCG- -5'
26640 5' -54.9 NC_005808.1 + 17463 0.66 0.646586
Target:  5'- -gCCGCUgaaucgaagcgGUGCGUCGGc--GCGAUGCa -3'
miRNA:   3'- aaGGUGA-----------UACGCGGCCcuuCGUUGCG- -5'
26640 5' -54.9 NC_005808.1 + 17700 0.71 0.36291
Target:  5'- -gCCACUcgG-GCCGGGAaaugcccaucgcGGCAagcuGCGCg -3'
miRNA:   3'- aaGGUGAuaCgCGGCCCU------------UCGU----UGCG- -5'
26640 5' -54.9 NC_005808.1 + 22753 0.67 0.567185
Target:  5'- -gCUGCUuucGCGCUGGG-GGCAACuGCg -3'
miRNA:   3'- aaGGUGAua-CGCGGCCCuUCGUUG-CG- -5'
26640 5' -54.9 NC_005808.1 + 23515 0.66 0.612428
Target:  5'- gUUCCGCgagcGCGCCuuccAGGCGGCGCa -3'
miRNA:   3'- -AAGGUGaua-CGCGGccc-UUCGUUGCG- -5'
26640 5' -54.9 NC_005808.1 + 23592 0.68 0.479887
Target:  5'- -aCCGC-GUGCGCCGccuGGAAGgcGCGCu -3'
miRNA:   3'- aaGGUGaUACGCGGC---CCUUCguUGCG- -5'
26640 5' -54.9 NC_005808.1 + 24278 0.66 0.635199
Target:  5'- -gCCGCU---CGCCGGacuuuGGCAGCGCc -3'
miRNA:   3'- aaGGUGAuacGCGGCCcu---UCGUUGCG- -5'
26640 5' -54.9 NC_005808.1 + 24794 0.66 0.635199
Target:  5'- -gCCGCgcagGCGCgGuGGAAGCGGCcCg -3'
miRNA:   3'- aaGGUGaua-CGCGgC-CCUUCGUUGcG- -5'
26640 5' -54.9 NC_005808.1 + 25141 0.73 0.246747
Target:  5'- --gCGCgcUGCGCUGGGuGGCGAUGCu -3'
miRNA:   3'- aagGUGauACGCGGCCCuUCGUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.