miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26640 5' -54.9 NC_005808.1 + 38877 0.77 0.129038
Target:  5'- aUCCGCgagcaugagcggAUGCGCCGcauGggGCAGCGCg -3'
miRNA:   3'- aAGGUGa-----------UACGCGGCc--CuuCGUUGCG- -5'
26640 5' -54.9 NC_005808.1 + 36421 0.66 0.642032
Target:  5'- --aCGCUGcggcaagaccggccUGCGCUGGGAagaugacGGCGGCGa -3'
miRNA:   3'- aagGUGAU--------------ACGCGGCCCU-------UCGUUGCg -5'
26640 5' -54.9 NC_005808.1 + 33053 0.66 0.635199
Target:  5'- -cCCGCgugcugucGUGCGCuucauCGGGucgcgcAGCGACGCg -3'
miRNA:   3'- aaGGUGa-------UACGCG-----GCCCu-----UCGUUGCG- -5'
26640 5' -54.9 NC_005808.1 + 23515 0.66 0.612428
Target:  5'- gUUCCGCgagcGCGCCuuccAGGCGGCGCa -3'
miRNA:   3'- -AAGGUGaua-CGCGGccc-UUCGUUGCG- -5'
26640 5' -54.9 NC_005808.1 + 25616 0.67 0.58973
Target:  5'- -aCCACg--GCGgCGcGGucgccAGCAGCGCg -3'
miRNA:   3'- aaGGUGauaCGCgGC-CCu----UCGUUGCG- -5'
26640 5' -54.9 NC_005808.1 + 8991 0.67 0.578434
Target:  5'- uUUCCuCgccGCGCgGGGGcgcuuccagcaGGCGGCGCa -3'
miRNA:   3'- -AAGGuGauaCGCGgCCCU-----------UCGUUGCG- -5'
26640 5' -54.9 NC_005808.1 + 37176 0.67 0.555992
Target:  5'- -gCCGCcAUccGCGCCGuGGAGCGuACGCa -3'
miRNA:   3'- aaGGUGaUA--CGCGGCcCUUCGU-UGCG- -5'
26640 5' -54.9 NC_005808.1 + 28390 0.67 0.555992
Target:  5'- gUUCCAgUucGaCGCCGGcGgcGCGGCGCc -3'
miRNA:   3'- -AAGGUgAuaC-GCGGCC-CuuCGUUGCG- -5'
26640 5' -54.9 NC_005808.1 + 28281 0.67 0.544865
Target:  5'- -aCCGC---GCGCUGGGAcaCGGCGCa -3'
miRNA:   3'- aaGGUGauaCGCGGCCCUucGUUGCG- -5'
26640 5' -54.9 NC_005808.1 + 12156 0.69 0.459065
Target:  5'- cUUCCGCguagGCGUCGGGGucAGUguccGAUGCg -3'
miRNA:   3'- -AAGGUGaua-CGCGGCCCU--UCG----UUGCG- -5'
26640 5' -54.9 NC_005808.1 + 31017 0.7 0.390263
Target:  5'- gUCCACgg-GCuuGCCGGccGAGGCAaucGCGCg -3'
miRNA:   3'- aAGGUGauaCG--CGGCC--CUUCGU---UGCG- -5'
26640 5' -54.9 NC_005808.1 + 31530 0.7 0.371878
Target:  5'- -cUCGCUGUGuUGCCGuGGAAaCAGCGCc -3'
miRNA:   3'- aaGGUGAUAC-GCGGC-CCUUcGUUGCG- -5'
26640 5' -54.9 NC_005808.1 + 6729 0.7 0.371878
Target:  5'- -gCCGCU--GCGCUGGGccGCcGCGCu -3'
miRNA:   3'- aaGGUGAuaCGCGGCCCuuCGuUGCG- -5'
26640 5' -54.9 NC_005808.1 + 17700 0.71 0.36291
Target:  5'- -gCCACUcgG-GCCGGGAaaugcccaucgcGGCAagcuGCGCg -3'
miRNA:   3'- aaGGUGAuaCgCGGCCCU------------UCGU----UGCG- -5'
26640 5' -54.9 NC_005808.1 + 9947 0.69 0.428764
Target:  5'- -gCCACgc-GCcugGCCGaGAAGCAGCGCg -3'
miRNA:   3'- aaGGUGauaCG---CGGCcCUUCGUUGCG- -5'
26640 5' -54.9 NC_005808.1 + 32442 0.69 0.418929
Target:  5'- cUUCCuGCUggGCgGCCGGGGccucGGCGGCGa -3'
miRNA:   3'- -AAGG-UGAuaCG-CGGCCCU----UCGUUGCg -5'
26640 5' -54.9 NC_005808.1 + 27958 0.7 0.380997
Target:  5'- aUCCGCgacGUGCUGGGcGAGCA-CGCc -3'
miRNA:   3'- aAGGUGauaCGCGGCCC-UUCGUuGCG- -5'
26640 5' -54.9 NC_005808.1 + 42379 0.73 0.274368
Target:  5'- gUCCAgUAgcUGCGCCGGaAGGC-GCGCu -3'
miRNA:   3'- aAGGUgAU--ACGCGGCCcUUCGuUGCG- -5'
26640 5' -54.9 NC_005808.1 + 25141 0.73 0.246747
Target:  5'- --gCGCgcUGCGCUGGGuGGCGAUGCu -3'
miRNA:   3'- aagGUGauACGCGGCCCuUCGUUGCG- -5'
26640 5' -54.9 NC_005808.1 + 6805 0.66 0.646586
Target:  5'- uUUCCGCUAUugaGCGCgGcGGcc-CAGCGCa -3'
miRNA:   3'- -AAGGUGAUA---CGCGgC-CCuucGUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.