miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26643 3' -64.4 NC_005808.1 + 10332 0.67 0.204241
Target:  5'- cAGGCCGUa---GCCGuCGCUGcGGCGu- -3'
miRNA:   3'- -UCCGGCGgcagCGGC-GCGAC-CCGUug -5'
26643 3' -64.4 NC_005808.1 + 22070 0.67 0.204241
Target:  5'- cGGGUCGCgGUCGgCGCGCggcucgauGGCGu- -3'
miRNA:   3'- -UCCGGCGgCAGCgGCGCGac------CCGUug -5'
26643 3' -64.4 NC_005808.1 + 21227 0.67 0.201107
Target:  5'- cAGGCCGCgcUGUUGaaccagggCGCggacacggcggccaaGCUGGGCAGCg -3'
miRNA:   3'- -UCCGGCG--GCAGCg-------GCG---------------CGACCCGUUG- -5'
26643 3' -64.4 NC_005808.1 + 20272 0.67 0.193954
Target:  5'- cGGCCGCgGgCGCUGCcaagaccgaGGGCGACg -3'
miRNA:   3'- uCCGGCGgCaGCGGCGcga------CCCGUUG- -5'
26643 3' -64.4 NC_005808.1 + 35410 0.67 0.193954
Target:  5'- cGGGCCGauGUCGCCG-GCcuUGuGCAGCu -3'
miRNA:   3'- -UCCGGCggCAGCGGCgCG--ACcCGUUG- -5'
26643 3' -64.4 NC_005808.1 + 24505 0.67 0.188983
Target:  5'- -uGUCGCCGagGCCGCGC-GcGGCAccgACa -3'
miRNA:   3'- ucCGGCGGCagCGGCGCGaC-CCGU---UG- -5'
26643 3' -64.4 NC_005808.1 + 30274 0.67 0.188983
Target:  5'- uGGUCGCgcgaGUCGCCGgaaaaCGUcGGGUAGCg -3'
miRNA:   3'- uCCGGCGg---CAGCGGC-----GCGaCCCGUUG- -5'
26643 3' -64.4 NC_005808.1 + 11834 0.67 0.188983
Target:  5'- cAGaCCgGCCG-CGCCGCGguuggcCUGGGCGAa -3'
miRNA:   3'- -UCcGG-CGGCaGCGGCGC------GACCCGUUg -5'
26643 3' -64.4 NC_005808.1 + 8212 0.67 0.188983
Target:  5'- cGGCC-UCGUaGUCGCGCUGGuCGGCg -3'
miRNA:   3'- uCCGGcGGCAgCGGCGCGACCcGUUG- -5'
26643 3' -64.4 NC_005808.1 + 3883 0.67 0.184124
Target:  5'- uAGGCCgcgcuGCCGUCGCCGCcgaaCUuGGUAGa -3'
miRNA:   3'- -UCCGG-----CGGCAGCGGCGc---GAcCCGUUg -5'
26643 3' -64.4 NC_005808.1 + 3551 0.67 0.184124
Target:  5'- -uGCCGCCGaacagCGCagcagCGgGCUGGGCGuACa -3'
miRNA:   3'- ucCGGCGGCa----GCG-----GCgCGACCCGU-UG- -5'
26643 3' -64.4 NC_005808.1 + 23554 0.67 0.179375
Target:  5'- uGGCCucgGCCGacaUCGCCggcaggugcggGCGggGGGCGACg -3'
miRNA:   3'- uCCGG---CGGC---AGCGG-----------CGCgaCCCGUUG- -5'
26643 3' -64.4 NC_005808.1 + 23159 0.67 0.179375
Target:  5'- gGGcGCCGCCGUUGgCGUcg-GGGCGAg -3'
miRNA:   3'- -UC-CGGCGGCAGCgGCGcgaCCCGUUg -5'
26643 3' -64.4 NC_005808.1 + 6650 0.68 0.174736
Target:  5'- uGG-UGCCG--GCCGUGCUGGGCuACu -3'
miRNA:   3'- uCCgGCGGCagCGGCGCGACCCGuUG- -5'
26643 3' -64.4 NC_005808.1 + 13454 0.68 0.174736
Target:  5'- -uGCCGCCuacaacCG-CGCGCUGGGCAu- -3'
miRNA:   3'- ucCGGCGGca----GCgGCGCGACCCGUug -5'
26643 3' -64.4 NC_005808.1 + 10819 0.68 0.174736
Target:  5'- cGGGCCGaaGUCGagCGCGCccuUGGcgaGCAGCa -3'
miRNA:   3'- -UCCGGCggCAGCg-GCGCG---ACC---CGUUG- -5'
26643 3' -64.4 NC_005808.1 + 34876 0.68 0.174736
Target:  5'- cGGCCGCCGa-GCgUGCGCUGcaguucaucGGCAAg -3'
miRNA:   3'- uCCGGCGGCagCG-GCGCGAC---------CCGUUg -5'
26643 3' -64.4 NC_005808.1 + 14425 0.68 0.174736
Target:  5'- cAGGCgCGCCugcggCaCCGUGUUGGGCGAa -3'
miRNA:   3'- -UCCG-GCGGca---GcGGCGCGACCCGUUg -5'
26643 3' -64.4 NC_005808.1 + 17655 0.68 0.174736
Target:  5'- cGGCCacgaucuugauGgCGUCGgCGgGCUGGGCGuagGCg -3'
miRNA:   3'- uCCGG-----------CgGCAGCgGCgCGACCCGU---UG- -5'
26643 3' -64.4 NC_005808.1 + 27899 0.68 0.170204
Target:  5'- cGGcGCgGCCGgCGCCacCGC-GGGCAGCg -3'
miRNA:   3'- -UC-CGgCGGCaGCGGc-GCGaCCCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.