miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26643 3' -64.4 NC_005808.1 + 20362 0.71 0.096629
Target:  5'- cGGCCGCCGagcaaccCGCUacugGUGC-GGGCAACg -3'
miRNA:   3'- uCCGGCGGCa------GCGG----CGCGaCCCGUUG- -5'
26643 3' -64.4 NC_005808.1 + 27491 0.71 0.099319
Target:  5'- cGGCCGCCGggCGCgGUGCgccaGGcgcGCGACg -3'
miRNA:   3'- uCCGGCGGCa-GCGgCGCGa---CC---CGUUG- -5'
26643 3' -64.4 NC_005808.1 + 14974 0.71 0.103206
Target:  5'- gAGGCCgGCCagcagcagaUCGCCGCGCagacccugaaagccGGGCAACu -3'
miRNA:   3'- -UCCGG-CGGc--------AGCGGCGCGa-------------CCCGUUG- -5'
26643 3' -64.4 NC_005808.1 + 30029 0.7 0.104057
Target:  5'- cAGGCCGUCGUgCGCCGCGacgacaagcaccacCUGacuGGCAAg -3'
miRNA:   3'- -UCCGGCGGCA-GCGGCGC--------------GAC---CCGUUg -5'
26643 3' -64.4 NC_005808.1 + 24225 0.7 0.104914
Target:  5'- aAGcGCgcaGCCGUCGagGCGCUGGGCcaGGCg -3'
miRNA:   3'- -UC-CGg--CGGCAGCggCGCGACCCG--UUG- -5'
26643 3' -64.4 NC_005808.1 + 1284 0.7 0.104914
Target:  5'- gAGGugaugcCCGCCcacacCGCCGCGCccaGGGCGACg -3'
miRNA:   3'- -UCC------GGCGGca---GCGGCGCGa--CCCGUUG- -5'
26643 3' -64.4 NC_005808.1 + 2155 0.7 0.107235
Target:  5'- uGGGCgCGCUacauggacgacaUCGUgGUGCUGGGCGACg -3'
miRNA:   3'- -UCCG-GCGGc-----------AGCGgCGCGACCCGUUG- -5'
26643 3' -64.4 NC_005808.1 + 10548 0.7 0.107528
Target:  5'- cGGCCcguucggGCCGgUGCUGCGCgacuuccaGGGCGACg -3'
miRNA:   3'- uCCGG-------CGGCaGCGGCGCGa-------CCCGUUG- -5'
26643 3' -64.4 NC_005808.1 + 25727 0.7 0.110503
Target:  5'- gGGGUCGUCGUCcucaccggcggcaGCaCGCugggcgcgcuGCUGGGCGGCg -3'
miRNA:   3'- -UCCGGCGGCAG-------------CG-GCG----------CGACCCGUUG- -5'
26643 3' -64.4 NC_005808.1 + 33145 0.7 0.110805
Target:  5'- uAGGCCGCCGcgUCGCUGCGCgaccCGAUg -3'
miRNA:   3'- -UCCGGCGGC--AGCGGCGCGacccGUUG- -5'
26643 3' -64.4 NC_005808.1 + 27554 0.7 0.118282
Target:  5'- gAGGCCGCCGgcauccUCGCguggugcgugcgcggCGCGCUGGcauacCAGCg -3'
miRNA:   3'- -UCCGGCGGC------AGCG---------------GCGCGACCc----GUUG- -5'
26643 3' -64.4 NC_005808.1 + 29390 0.7 0.120224
Target:  5'- uGGCCGgCGacCGCCaccgccuugaaGUGCUGGGCAAg -3'
miRNA:   3'- uCCGGCgGCa-GCGG-----------CGCGACCCGUUg -5'
26643 3' -64.4 NC_005808.1 + 29731 0.7 0.120224
Target:  5'- --aCgGCCG-CGCCcUGCUGGGCAACg -3'
miRNA:   3'- uccGgCGGCaGCGGcGCGACCCGUUG- -5'
26643 3' -64.4 NC_005808.1 + 21146 0.7 0.123525
Target:  5'- uGGCCGCCGUguCCGCGCccUGGuuCAACa -3'
miRNA:   3'- uCCGGCGGCAgcGGCGCG--ACCc-GUUG- -5'
26643 3' -64.4 NC_005808.1 + 1522 0.69 0.130031
Target:  5'- gAGGCCGCCGaccgCGCCGUcaagaagguguuuGCcaucuUGGGCGu- -3'
miRNA:   3'- -UCCGGCGGCa---GCGGCG-------------CG-----ACCCGUug -5'
26643 3' -64.4 NC_005808.1 + 28926 0.69 0.130382
Target:  5'- gAGGaCGUgG-CGCgGCGCUGGGaCAGCu -3'
miRNA:   3'- -UCCgGCGgCaGCGgCGCGACCC-GUUG- -5'
26643 3' -64.4 NC_005808.1 + 37511 0.69 0.133941
Target:  5'- cAGGCgGCCGUCGCUGCucacGCccuuGGCGAg -3'
miRNA:   3'- -UCCGgCGGCAGCGGCG----CGac--CCGUUg -5'
26643 3' -64.4 NC_005808.1 + 11651 0.69 0.133941
Target:  5'- cGGCCaGCCG--GCgGCcCUGGGCGGCa -3'
miRNA:   3'- uCCGG-CGGCagCGgCGcGACCCGUUG- -5'
26643 3' -64.4 NC_005808.1 + 3543 0.69 0.133941
Target:  5'- cGGGCCGUCGaacUCGCC-CGCgaacaucgGGGCGcGCg -3'
miRNA:   3'- -UCCGGCGGC---AGCGGcGCGa-------CCCGU-UG- -5'
26643 3' -64.4 NC_005808.1 + 40018 0.69 0.13759
Target:  5'- aGGGCgGCaagCGcgCGCaCGCGCUGGGCc-- -3'
miRNA:   3'- -UCCGgCG---GCa-GCG-GCGCGACCCGuug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.