Results 1 - 20 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26643 | 3' | -64.4 | NC_005808.1 | + | 4944 | 1.09 | 0.000087 |
Target: 5'- gAGGCCGCCGUCGCCGCGCUGGGCAACg -3' miRNA: 3'- -UCCGGCGGCAGCGGCGCGACCCGUUG- -5' |
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26643 | 3' | -64.4 | NC_005808.1 | + | 25150 | 0.8 | 0.019906 |
Target: 5'- cGG-CGCCGggcgCGCUGCGCUGGGUGGCg -3' miRNA: 3'- uCCgGCGGCa---GCGGCGCGACCCGUUG- -5' |
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26643 | 3' | -64.4 | NC_005808.1 | + | 24622 | 0.78 | 0.028863 |
Target: 5'- cGGCCucGCCaUCGCCGCGCUGcGCGACc -3' miRNA: 3'- uCCGG--CGGcAGCGGCGCGACcCGUUG- -5' |
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26643 | 3' | -64.4 | NC_005808.1 | + | 11592 | 0.77 | 0.032346 |
Target: 5'- aGGGCCGCCGgcugGCCGC-C-GGGCAGCa -3' miRNA: 3'- -UCCGGCGGCag--CGGCGcGaCCCGUUG- -5' |
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26643 | 3' | -64.4 | NC_005808.1 | + | 12358 | 0.76 | 0.037286 |
Target: 5'- -cGCCGCCGUaGCCGgcaCGCUGGGcCAGCa -3' miRNA: 3'- ucCGGCGGCAgCGGC---GCGACCC-GUUG- -5' |
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26643 | 3' | -64.4 | NC_005808.1 | + | 13168 | 0.75 | 0.045463 |
Target: 5'- cGGCCagUGUCgGCCGCGCUGGGCGc- -3' miRNA: 3'- uCCGGcgGCAG-CGGCGCGACCCGUug -5' |
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26643 | 3' | -64.4 | NC_005808.1 | + | 41874 | 0.75 | 0.048106 |
Target: 5'- cGGGCCGCUGcgcaaUCGCCGUcagcaggugGCUGGGCuugAGCg -3' miRNA: 3'- -UCCGGCGGC-----AGCGGCG---------CGACCCG---UUG- -5' |
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26643 | 3' | -64.4 | NC_005808.1 | + | 12741 | 0.74 | 0.050897 |
Target: 5'- cGGGCC-UCGacacgCGCCGCGCaugaUGGGCGACg -3' miRNA: 3'- -UCCGGcGGCa----GCGGCGCG----ACCCGUUG- -5' |
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26643 | 3' | -64.4 | NC_005808.1 | + | 6911 | 0.74 | 0.052351 |
Target: 5'- gGGGCCuacgaaaagGCCGUCGCCGa---GGGCAACg -3' miRNA: 3'- -UCCGG---------CGGCAGCGGCgcgaCCCGUUG- -5' |
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26643 | 3' | -64.4 | NC_005808.1 | + | 14348 | 0.73 | 0.06553 |
Target: 5'- uGGGCCGCa-UCGCCGacaGCaUGGuGCAGCa -3' miRNA: 3'- -UCCGGCGgcAGCGGCg--CG-ACC-CGUUG- -5' |
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26643 | 3' | -64.4 | NC_005808.1 | + | 28557 | 0.73 | 0.069489 |
Target: 5'- cGGCCGCCGgccaUCGCgGCGCgcacgucggccaccGGCAGCg -3' miRNA: 3'- uCCGGCGGC----AGCGgCGCGac------------CCGUUG- -5' |
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26643 | 3' | -64.4 | NC_005808.1 | + | 4447 | 0.73 | 0.071255 |
Target: 5'- aAGGCCgacaagucgGCCGUCGCCuucacGCGCaccGGCAACg -3' miRNA: 3'- -UCCGG---------CGGCAGCGG-----CGCGac-CCGUUG- -5' |
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26643 | 3' | -64.4 | NC_005808.1 | + | 1371 | 0.72 | 0.077245 |
Target: 5'- uGGUgGCCGUCGCCcuggGCGCggcggugUGGGCGGg -3' miRNA: 3'- uCCGgCGGCAGCGG----CGCG-------ACCCGUUg -5' |
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26643 | 3' | -64.4 | NC_005808.1 | + | 36841 | 0.72 | 0.07964 |
Target: 5'- aAGGCCcuggcgcacucGCUGccCGgCGCGCUGGGCGAUc -3' miRNA: 3'- -UCCGG-----------CGGCa-GCgGCGCGACCCGUUG- -5' |
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26643 | 3' | -64.4 | NC_005808.1 | + | 13084 | 0.72 | 0.08654 |
Target: 5'- gAGGCCGUCGcCaCUGCGCUGcGCGGCc -3' miRNA: 3'- -UCCGGCGGCaGcGGCGCGACcCGUUG- -5' |
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26643 | 3' | -64.4 | NC_005808.1 | + | 23236 | 0.71 | 0.088964 |
Target: 5'- cGGCCaCCGaccgCGCCuCGCUGGGgAACa -3' miRNA: 3'- uCCGGcGGCa---GCGGcGCGACCCgUUG- -5' |
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26643 | 3' | -64.4 | NC_005808.1 | + | 14852 | 0.71 | 0.088964 |
Target: 5'- uGGCgGCCaG-CGCCGCacGCUGGGCGc- -3' miRNA: 3'- uCCGgCGG-CaGCGGCG--CGACCCGUug -5' |
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26643 | 3' | -64.4 | NC_005808.1 | + | 11157 | 0.71 | 0.091201 |
Target: 5'- uGGGCCGCCugcgcacGUUGCgUGCGCUGGuCGGCc -3' miRNA: 3'- -UCCGGCGG-------CAGCG-GCGCGACCcGUUG- -5' |
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26643 | 3' | -64.4 | NC_005808.1 | + | 34399 | 0.71 | 0.094007 |
Target: 5'- uGGCCGCCauGUCGCUGaCGaacGGGCAGg -3' miRNA: 3'- uCCGGCGG--CAGCGGC-GCga-CCCGUUg -5' |
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26643 | 3' | -64.4 | NC_005808.1 | + | 38104 | 0.71 | 0.096629 |
Target: 5'- gAGGCCGaaGUCGCCgagGCGCUGcucggugcgccaGGCGAg -3' miRNA: 3'- -UCCGGCggCAGCGG---CGCGAC------------CCGUUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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