miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26643 3' -64.4 NC_005808.1 + 677 0.69 0.141329
Target:  5'- cAGGCCGCCuacggcggCGCCG-GCcGGGCcGCc -3'
miRNA:   3'- -UCCGGCGGca------GCGGCgCGaCCCGuUG- -5'
26643 3' -64.4 NC_005808.1 + 1284 0.7 0.104914
Target:  5'- gAGGugaugcCCGCCcacacCGCCGCGCccaGGGCGACg -3'
miRNA:   3'- -UCC------GGCGGca---GCGGCGCGa--CCCGUUG- -5'
26643 3' -64.4 NC_005808.1 + 1371 0.72 0.077245
Target:  5'- uGGUgGCCGUCGCCcuggGCGCggcggugUGGGCGGg -3'
miRNA:   3'- uCCGgCGGCAGCGG----CGCG-------ACCCGUUg -5'
26643 3' -64.4 NC_005808.1 + 1522 0.69 0.130031
Target:  5'- gAGGCCGCCGaccgCGCCGUcaagaagguguuuGCcaucuUGGGCGu- -3'
miRNA:   3'- -UCCGGCGGCa---GCGGCG-------------CG-----ACCCGUug -5'
26643 3' -64.4 NC_005808.1 + 2155 0.7 0.107235
Target:  5'- uGGGCgCGCUacauggacgacaUCGUgGUGCUGGGCGACg -3'
miRNA:   3'- -UCCG-GCGGc-----------AGCGgCGCGACCCGUUG- -5'
26643 3' -64.4 NC_005808.1 + 3543 0.69 0.133941
Target:  5'- cGGGCCGUCGaacUCGCC-CGCgaacaucgGGGCGcGCg -3'
miRNA:   3'- -UCCGGCGGC---AGCGGcGCGa-------CCCGU-UG- -5'
26643 3' -64.4 NC_005808.1 + 3551 0.67 0.184124
Target:  5'- -uGCCGCCGaacagCGCagcagCGgGCUGGGCGuACa -3'
miRNA:   3'- ucCGGCGGCa----GCG-----GCgCGACCCGU-UG- -5'
26643 3' -64.4 NC_005808.1 + 3749 0.68 0.157232
Target:  5'- uGGGCaCGUCGgUGCCGcCGCUGGacGUAGCc -3'
miRNA:   3'- -UCCG-GCGGCaGCGGC-GCGACC--CGUUG- -5'
26643 3' -64.4 NC_005808.1 + 3883 0.67 0.184124
Target:  5'- uAGGCCgcgcuGCCGUCGCCGCcgaaCUuGGUAGa -3'
miRNA:   3'- -UCCGG-----CGGCAGCGGCGc---GAcCCGUUg -5'
26643 3' -64.4 NC_005808.1 + 4354 0.69 0.141329
Target:  5'- uGGCCGUugCGUUGCCgguGCGCgugaaGGCGACg -3'
miRNA:   3'- uCCGGCG--GCAGCGG---CGCGac---CCGUUG- -5'
26643 3' -64.4 NC_005808.1 + 4447 0.73 0.071255
Target:  5'- aAGGCCgacaagucgGCCGUCGCCuucacGCGCaccGGCAACg -3'
miRNA:   3'- -UCCGG---------CGGCAGCGG-----CGCGac-CCGUUG- -5'
26643 3' -64.4 NC_005808.1 + 4944 1.09 0.000087
Target:  5'- gAGGCCGCCGUCGCCGCGCUGGGCAACg -3'
miRNA:   3'- -UCCGGCGGCAGCGGCGCGACCCGUUG- -5'
26643 3' -64.4 NC_005808.1 + 5633 0.66 0.20956
Target:  5'- cGGCCagcguuggcGCCGUCGauaCCGUGgC-GGGCGACc -3'
miRNA:   3'- uCCGG---------CGGCAGC---GGCGC-GaCCCGUUG- -5'
26643 3' -64.4 NC_005808.1 + 6242 0.68 0.153111
Target:  5'- aGGGCCugcacGCCGguaacggUGCgguugaucugCGCGCUGGGCAGg -3'
miRNA:   3'- -UCCGG-----CGGCa------GCG----------GCGCGACCCGUUg -5'
26643 3' -64.4 NC_005808.1 + 6650 0.68 0.174736
Target:  5'- uGG-UGCCG--GCCGUGCUGGGCuACu -3'
miRNA:   3'- uCCgGCGGCagCGGCGCGACCCGuUG- -5'
26643 3' -64.4 NC_005808.1 + 6911 0.74 0.052351
Target:  5'- gGGGCCuacgaaaagGCCGUCGCCGa---GGGCAACg -3'
miRNA:   3'- -UCCGG---------CGGCAGCGGCgcgaCCCGUUG- -5'
26643 3' -64.4 NC_005808.1 + 8212 0.67 0.188983
Target:  5'- cGGCC-UCGUaGUCGCGCUGGuCGGCg -3'
miRNA:   3'- uCCGGcGGCAgCGGCGCGACCcGUUG- -5'
26643 3' -64.4 NC_005808.1 + 8748 0.66 0.231455
Target:  5'- aGGGCgCGCgCGUauucacgUGCCGCuucGGGCAGCa -3'
miRNA:   3'- -UCCG-GCG-GCA-------GCGGCGcgaCCCGUUG- -5'
26643 3' -64.4 NC_005808.1 + 8977 0.66 0.226237
Target:  5'- cGGUaaCGCCucgauuuccUCGCCGCGCggGGGCGc- -3'
miRNA:   3'- uCCG--GCGGc--------AGCGGCGCGa-CCCGUug -5'
26643 3' -64.4 NC_005808.1 + 9320 0.68 0.165777
Target:  5'- uGGCggCGCaCGUCGgCGCgGC-GGGCGGCg -3'
miRNA:   3'- uCCG--GCG-GCAGCgGCG-CGaCCCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.