miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26643 3' -64.4 NC_005808.1 + 41874 0.75 0.048106
Target:  5'- cGGGCCGCUGcgcaaUCGCCGUcagcaggugGCUGGGCuugAGCg -3'
miRNA:   3'- -UCCGGCGGC-----AGCGGCG---------CGACCCG---UUG- -5'
26643 3' -64.4 NC_005808.1 + 41773 0.65 0.242195
Target:  5'- aGGGCCGCCGcguuguuccagaagUUGaCCGCGCUuucGUAGCc -3'
miRNA:   3'- -UCCGGCGGC--------------AGC-GGCGCGAcc-CGUUG- -5'
26643 3' -64.4 NC_005808.1 + 40572 0.66 0.232041
Target:  5'- gAGGCgGCCGguaUGCCgGUGCU-GGUGGCg -3'
miRNA:   3'- -UCCGgCGGCa--GCGG-CGCGAcCCGUUG- -5'
26643 3' -64.4 NC_005808.1 + 40018 0.69 0.13759
Target:  5'- aGGGCgGCaagCGcgCGCaCGCGCUGGGCc-- -3'
miRNA:   3'- -UCCGgCG---GCa-GCG-GCGCGACCCGuug -5'
26643 3' -64.4 NC_005808.1 + 38557 0.66 0.220556
Target:  5'- uGGCCuGCCGcUCGCCGCGgccGGCu-- -3'
miRNA:   3'- uCCGG-CGGC-AGCGGCGCgacCCGuug -5'
26643 3' -64.4 NC_005808.1 + 38104 0.71 0.096629
Target:  5'- gAGGCCGaaGUCGCCgagGCGCUGcucggugcgccaGGCGAg -3'
miRNA:   3'- -UCCGGCggCAGCGG---CGCGAC------------CCGUUg -5'
26643 3' -64.4 NC_005808.1 + 37511 0.69 0.133941
Target:  5'- cAGGCgGCCGUCGCUGCucacGCccuuGGCGAg -3'
miRNA:   3'- -UCCGgCGGCAGCGGCG----CGac--CCGUUg -5'
26643 3' -64.4 NC_005808.1 + 37355 0.66 0.214998
Target:  5'- cAGGUCgagGCCGUagGCCGCGagcacgUGGcGCAGCa -3'
miRNA:   3'- -UCCGG---CGGCAg-CGGCGCg-----ACC-CGUUG- -5'
26643 3' -64.4 NC_005808.1 + 36930 0.66 0.23797
Target:  5'- -uGUCGCacaGaUCGCCcagcGCGCcGGGCAGCg -3'
miRNA:   3'- ucCGGCGg--C-AGCGG----CGCGaCCCGUUG- -5'
26643 3' -64.4 NC_005808.1 + 36841 0.72 0.07964
Target:  5'- aAGGCCcuggcgcacucGCUGccCGgCGCGCUGGGCGAUc -3'
miRNA:   3'- -UCCGG-----------CGGCa-GCgGCGCGACCCGUUG- -5'
26643 3' -64.4 NC_005808.1 + 35410 0.67 0.193954
Target:  5'- cGGGCCGauGUCGCCG-GCcuUGuGCAGCu -3'
miRNA:   3'- -UCCGGCggCAGCGGCgCG--ACcCGUUG- -5'
26643 3' -64.4 NC_005808.1 + 34876 0.68 0.174736
Target:  5'- cGGCCGCCGa-GCgUGCGCUGcaguucaucGGCAAg -3'
miRNA:   3'- uCCGGCGGCagCG-GCGCGAC---------CCGUUg -5'
26643 3' -64.4 NC_005808.1 + 34399 0.71 0.094007
Target:  5'- uGGCCGCCauGUCGCUGaCGaacGGGCAGg -3'
miRNA:   3'- uCCGGCGG--CAGCGGC-GCga-CCCGUUg -5'
26643 3' -64.4 NC_005808.1 + 33145 0.7 0.110805
Target:  5'- uAGGCCGCCGcgUCGCUGCGCgaccCGAUg -3'
miRNA:   3'- -UCCGGCGGC--AGCGGCGCGacccGUUG- -5'
26643 3' -64.4 NC_005808.1 + 32434 0.69 0.139074
Target:  5'- uGGGCgGCCGggGCCucggcggcgaccgcaGCGacCUGGGCGGCg -3'
miRNA:   3'- -UCCGgCGGCagCGG---------------CGC--GACCCGUUG- -5'
26643 3' -64.4 NC_005808.1 + 30274 0.67 0.188983
Target:  5'- uGGUCGCgcgaGUCGCCGgaaaaCGUcGGGUAGCg -3'
miRNA:   3'- uCCGGCGg---CAGCGGC-----GCGaCCCGUUG- -5'
26643 3' -64.4 NC_005808.1 + 30029 0.7 0.104057
Target:  5'- cAGGCCGUCGUgCGCCGCGacgacaagcaccacCUGacuGGCAAg -3'
miRNA:   3'- -UCCGGCGGCA-GCGGCGC--------------GAC---CCGUUg -5'
26643 3' -64.4 NC_005808.1 + 29731 0.7 0.120224
Target:  5'- --aCgGCCG-CGCCcUGCUGGGCAACg -3'
miRNA:   3'- uccGgCGGCaGCGGcGCGACCCGUUG- -5'
26643 3' -64.4 NC_005808.1 + 29540 0.66 0.20956
Target:  5'- uGGCCGCagaGgacacccaCGCCGUGCUcgGGGUAucGCg -3'
miRNA:   3'- uCCGGCGg--Ca-------GCGGCGCGA--CCCGU--UG- -5'
26643 3' -64.4 NC_005808.1 + 29495 0.66 0.214998
Target:  5'- uGGGCgCGaCGU-GCgaGCGCgUGGGCAACg -3'
miRNA:   3'- -UCCG-GCgGCAgCGg-CGCG-ACCCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.