Results 61 - 80 of 138 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26644 | 3' | -47.7 | NC_005808.1 | + | 38402 | 0.68 | 0.922367 |
Target: 5'- gACGugcuCGCGGcCAACAugcccgccaUCGAgGCGGCCg -3' miRNA: 3'- -UGUu---GCGUCuGUUGU---------AGUUaCGCUGG- -5' |
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26644 | 3' | -47.7 | NC_005808.1 | + | 37896 | 0.68 | 0.922367 |
Target: 5'- gGCuACGaGGGCGGCGUCGGUGCcuuucuACCg -3' miRNA: 3'- -UGuUGCgUCUGUUGUAGUUACGc-----UGG- -5' |
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26644 | 3' | -47.7 | NC_005808.1 | + | 22885 | 0.68 | 0.918477 |
Target: 5'- gGCAGCGCGG-CGAaGUCGggccaguccggcaccAUGCuGACCg -3' miRNA: 3'- -UGUUGCGUCuGUUgUAGU---------------UACG-CUGG- -5' |
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26644 | 3' | -47.7 | NC_005808.1 | + | 37566 | 0.68 | 0.915819 |
Target: 5'- gGCGGC-CGGccCAGCGUcCGGUGCGGCUg -3' miRNA: 3'- -UGUUGcGUCu-GUUGUA-GUUACGCUGG- -5' |
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26644 | 3' | -47.7 | NC_005808.1 | + | 17437 | 0.68 | 0.915819 |
Target: 5'- cGCGAUGCAGGCAuACcuGUCGcagGCGAUg -3' miRNA: 3'- -UGUUGCGUCUGU-UG--UAGUua-CGCUGg -5' |
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26644 | 3' | -47.7 | NC_005808.1 | + | 4331 | 0.68 | 0.915819 |
Target: 5'- cACGAUGguGcCAGCcUUGAUGCuGGCCg -3' miRNA: 3'- -UGUUGCguCuGUUGuAGUUACG-CUGG- -5' |
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26644 | 3' | -47.7 | NC_005808.1 | + | 39866 | 0.68 | 0.915819 |
Target: 5'- aGCAGCGcCGGGCcGCGcUCAA-GCGuCCg -3' miRNA: 3'- -UGUUGC-GUCUGuUGU-AGUUaCGCuGG- -5' |
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26644 | 3' | -47.7 | NC_005808.1 | + | 621 | 0.68 | 0.915819 |
Target: 5'- aGCAGCGCcguGGACAcggcguccgGCGUCGAgucgGUGcCCa -3' miRNA: 3'- -UGUUGCG---UCUGU---------UGUAGUUa---CGCuGG- -5' |
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26644 | 3' | -47.7 | NC_005808.1 | + | 24850 | 0.68 | 0.908953 |
Target: 5'- uCAACGCGGGCA---UCGAgGaCGACCc -3' miRNA: 3'- uGUUGCGUCUGUuguAGUUaC-GCUGG- -5' |
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26644 | 3' | -47.7 | NC_005808.1 | + | 39048 | 0.68 | 0.908953 |
Target: 5'- uGCGGCGCGGuuGGCGggacugCGcgguGUGCGGCUg -3' miRNA: 3'- -UGUUGCGUCugUUGUa-----GU----UACGCUGG- -5' |
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26644 | 3' | -47.7 | NC_005808.1 | + | 12622 | 0.68 | 0.908953 |
Target: 5'- cCGACGCGcuCGGCAUCGcUGCuGCCg -3' miRNA: 3'- uGUUGCGUcuGUUGUAGUuACGcUGG- -5' |
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26644 | 3' | -47.7 | NC_005808.1 | + | 16094 | 0.68 | 0.901771 |
Target: 5'- uACAACugGCAGGCcaacgguuuCGUCAccgGCGACCu -3' miRNA: 3'- -UGUUG--CGUCUGuu-------GUAGUua-CGCUGG- -5' |
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26644 | 3' | -47.7 | NC_005808.1 | + | 5630 | 0.68 | 0.901771 |
Target: 5'- nCAGCGUuGGCGcCGUCGAUaccguggcggGCGACCu -3' miRNA: 3'- uGUUGCGuCUGUuGUAGUUA----------CGCUGG- -5' |
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26644 | 3' | -47.7 | NC_005808.1 | + | 28774 | 0.69 | 0.894278 |
Target: 5'- cGCGuGCGCcGACAGCAUCGAccuUGUGAa- -3' miRNA: 3'- -UGU-UGCGuCUGUUGUAGUU---ACGCUgg -5' |
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26644 | 3' | -47.7 | NC_005808.1 | + | 37244 | 0.69 | 0.894278 |
Target: 5'- cGCggUGCAGGCGGCcacgCAGcGCGAUg -3' miRNA: 3'- -UGuuGCGUCUGUUGua--GUUaCGCUGg -5' |
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26644 | 3' | -47.7 | NC_005808.1 | + | 12027 | 0.69 | 0.894278 |
Target: 5'- gACAACGUGGACAACA------UGACCg -3' miRNA: 3'- -UGUUGCGUCUGUUGUaguuacGCUGG- -5' |
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26644 | 3' | -47.7 | NC_005808.1 | + | 12704 | 0.69 | 0.894278 |
Target: 5'- cCGACGCcaaaGGACGGCAgcagCGAUGcCGAgCg -3' miRNA: 3'- uGUUGCG----UCUGUUGUa---GUUAC-GCUgG- -5' |
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26644 | 3' | -47.7 | NC_005808.1 | + | 4825 | 0.69 | 0.894278 |
Target: 5'- gGCgAACGCcGAgAACAUCGcgGCcguGGCCg -3' miRNA: 3'- -UG-UUGCGuCUgUUGUAGUuaCG---CUGG- -5' |
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26644 | 3' | -47.7 | NC_005808.1 | + | 24539 | 0.69 | 0.889634 |
Target: 5'- -uGGCGCAGGcCAagcagcaggucgucgGCGUCAAUGUcGCCg -3' miRNA: 3'- ugUUGCGUCU-GU---------------UGUAGUUACGcUGG- -5' |
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26644 | 3' | -47.7 | NC_005808.1 | + | 18979 | 0.69 | 0.886477 |
Target: 5'- cCAGCGCGGGCGccgaccuCAUCGAccUGaUGACCc -3' miRNA: 3'- uGUUGCGUCUGUu------GUAGUU--AC-GCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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