miRNA display CGI


Results 41 - 60 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26644 3' -47.7 NC_005808.1 + 18253 0.67 0.95032
Target:  5'- aACGA-GguGACAGCAUgGAaGUGAUCg -3'
miRNA:   3'- -UGUUgCguCUGUUGUAgUUaCGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 8576 0.67 0.95032
Target:  5'- gGCGuCGUAGGCcGCGc--GUGCGGCCu -3'
miRNA:   3'- -UGUuGCGUCUGuUGUaguUACGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 13621 0.67 0.95032
Target:  5'- aACAuCGCcGugGGCAcCGAgucagGCGGCCg -3'
miRNA:   3'- -UGUuGCGuCugUUGUaGUUa----CGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 4923 0.67 0.944849
Target:  5'- gGCAACGaccugacCGGGCAACcuauggucAUCGAcuacgGCGACCu -3'
miRNA:   3'- -UGUUGC-------GUCUGUUG--------UAGUUa----CGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 8115 0.67 0.944849
Target:  5'- -gGGCGCgcgucauGGACGGCggCAAggacgGCGGCCc -3'
miRNA:   3'- ugUUGCG-------UCUGUUGuaGUUa----CGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 38280 0.67 0.942237
Target:  5'- cGCAGC-CAGGCGcCGUCGcgccgggccuugagcGUGCGGCa -3'
miRNA:   3'- -UGUUGcGUCUGUuGUAGU---------------UACGCUGg -5'
26644 3' -47.7 NC_005808.1 + 15762 0.67 0.940091
Target:  5'- cCAG-GCGGACGccuucuuCGUCGAUaGCGGCCu -3'
miRNA:   3'- uGUUgCGUCUGUu------GUAGUUA-CGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 37518 0.67 0.940091
Target:  5'- uGCcGCGCAGGCGGcCGUCGcUGCucacGCCc -3'
miRNA:   3'- -UGuUGCGUCUGUU-GUAGUuACGc---UGG- -5'
26644 3' -47.7 NC_005808.1 + 32710 0.67 0.934503
Target:  5'- cGCGGCGCcgaacuucgacaGGACAGCAccgCGGcgucGCGGCCc -3'
miRNA:   3'- -UGUUGCG------------UCUGUUGUa--GUUa---CGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 27877 0.67 0.934503
Target:  5'- gGCAGCGCGcgcGAgGACGUgc-UGCGGCUg -3'
miRNA:   3'- -UGUUGCGU---CUgUUGUAguuACGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 2154 0.67 0.933926
Target:  5'- -gGGCGCgcuacauGGACGACAUCGuggugcuggGCGACg -3'
miRNA:   3'- ugUUGCG-------UCUGUUGUAGUua-------CGCUGg -5'
26644 3' -47.7 NC_005808.1 + 19240 0.67 0.933926
Target:  5'- cGCGGCGuCAGGCccaugaacuucucGGCGUCGAUGCuggaaucGCCg -3'
miRNA:   3'- -UGUUGC-GUCUG-------------UUGUAGUUACGc------UGG- -5'
26644 3' -47.7 NC_005808.1 + 27524 0.68 0.928595
Target:  5'- cGCGGCGCGcuGGCAuaccaGCGcCAGggccUGCGGCCg -3'
miRNA:   3'- -UGUUGCGU--CUGU-----UGUaGUU----ACGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 28235 0.68 0.928595
Target:  5'- -gGGCGUGGGCAACggcgugGUCGAUcUGACCa -3'
miRNA:   3'- ugUUGCGUCUGUUG------UAGUUAcGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 15048 0.68 0.928595
Target:  5'- nCAAUGCcGACGcCAUUcugGCGACCg -3'
miRNA:   3'- uGUUGCGuCUGUuGUAGuuaCGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 37327 0.68 0.928595
Target:  5'- -uGGCGCAGcAUGGCAUCGcgcUGCGugGCCg -3'
miRNA:   3'- ugUUGCGUC-UGUUGUAGUu--ACGC--UGG- -5'
26644 3' -47.7 NC_005808.1 + 9336 0.68 0.924897
Target:  5'- cGCGGCGgGcGGCGGCAUCcuuuugcaguugcuuGAugaUGCGGCCg -3'
miRNA:   3'- -UGUUGCgU-CUGUUGUAG---------------UU---ACGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 38402 0.68 0.922367
Target:  5'- gACGugcuCGCGGcCAACAugcccgccaUCGAgGCGGCCg -3'
miRNA:   3'- -UGUu---GCGUCuGUUGU---------AGUUaCGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 37896 0.68 0.922367
Target:  5'- gGCuACGaGGGCGGCGUCGGUGCcuuucuACCg -3'
miRNA:   3'- -UGuUGCgUCUGUUGUAGUUACGc-----UGG- -5'
26644 3' -47.7 NC_005808.1 + 8744 0.68 0.922367
Target:  5'- cCAACGCcgAGgucgcGCGGCAcgCAAUGcCGACCg -3'
miRNA:   3'- uGUUGCG--UC-----UGUUGUa-GUUAC-GCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.