Results 41 - 60 of 138 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26644 | 3' | -47.7 | NC_005808.1 | + | 35890 | 0.7 | 0.833632 |
Target: 5'- aGCAgauGCGCgcccaGGACAaggugugccuGCA-CGAUGCGACCu -3' miRNA: 3'- -UGU---UGCG-----UCUGU----------UGUaGUUACGCUGG- -5' |
|||||||
26644 | 3' | -47.7 | NC_005808.1 | + | 24795 | 0.7 | 0.843115 |
Target: 5'- gGCcGCGCAGGCGcgGUgGAaGCGGCCc -3' miRNA: 3'- -UGuUGCGUCUGUugUAgUUaCGCUGG- -5' |
|||||||
26644 | 3' | -47.7 | NC_005808.1 | + | 16251 | 0.7 | 0.843115 |
Target: 5'- gAUAugGCGGAUGGCGUUGGccucgcgcGCGGCCa -3' miRNA: 3'- -UGUugCGUCUGUUGUAGUUa-------CGCUGG- -5' |
|||||||
26644 | 3' | -47.7 | NC_005808.1 | + | 28916 | 0.7 | 0.85234 |
Target: 5'- cGCGGCGCugGGACAGCuucggCAAgucCGGCCg -3' miRNA: 3'- -UGUUGCG--UCUGUUGua---GUUac-GCUGG- -5' |
|||||||
26644 | 3' | -47.7 | NC_005808.1 | + | 24557 | 0.7 | 0.85234 |
Target: 5'- cGCAGCGCGG-CGAUggCGAgGcCGGCCa -3' miRNA: 3'- -UGUUGCGUCuGUUGuaGUUaC-GCUGG- -5' |
|||||||
26644 | 3' | -47.7 | NC_005808.1 | + | 26220 | 0.7 | 0.861299 |
Target: 5'- cGCAuCGCAGACGGCGagcCGcUGCG-CCa -3' miRNA: 3'- -UGUuGCGUCUGUUGUa--GUuACGCuGG- -5' |
|||||||
26644 | 3' | -47.7 | NC_005808.1 | + | 34216 | 0.7 | 0.861299 |
Target: 5'- uCGGCGCGauGuCGGCGUCGAgGUGGCCu -3' miRNA: 3'- uGUUGCGU--CuGUUGUAGUUaCGCUGG- -5' |
|||||||
26644 | 3' | -47.7 | NC_005808.1 | + | 8047 | 0.7 | 0.861299 |
Target: 5'- -gAGCGCGG-CGACAUggaaaccaCGAUGCGcGCCg -3' miRNA: 3'- ugUUGCGUCuGUUGUA--------GUUACGC-UGG- -5' |
|||||||
26644 | 3' | -47.7 | NC_005808.1 | + | 41559 | 0.69 | 0.86998 |
Target: 5'- gGCGGCgGUAGGCGGCAaaggcuugccgUCGAUcaugagcaGCGGCCg -3' miRNA: 3'- -UGUUG-CGUCUGUUGU-----------AGUUA--------CGCUGG- -5' |
|||||||
26644 | 3' | -47.7 | NC_005808.1 | + | 4452 | 0.69 | 0.86998 |
Target: 5'- cCAGCGguGGCAcCGUC-AUGCacaacGACCg -3' miRNA: 3'- uGUUGCguCUGUuGUAGuUACG-----CUGG- -5' |
|||||||
26644 | 3' | -47.7 | NC_005808.1 | + | 35345 | 0.69 | 0.878375 |
Target: 5'- cACAAgGCcGGCGACAUCGGcccGCG-CCa -3' miRNA: 3'- -UGUUgCGuCUGUUGUAGUUa--CGCuGG- -5' |
|||||||
26644 | 3' | -47.7 | NC_005808.1 | + | 9513 | 0.69 | 0.878375 |
Target: 5'- cCGugGCGaACAgugGCAUCAugcUGCGGCCc -3' miRNA: 3'- uGUugCGUcUGU---UGUAGUu--ACGCUGG- -5' |
|||||||
26644 | 3' | -47.7 | NC_005808.1 | + | 2375 | 0.69 | 0.878375 |
Target: 5'- cACGugGCAGACGcCcgC-GUGCGuACCc -3' miRNA: 3'- -UGUugCGUCUGUuGuaGuUACGC-UGG- -5' |
|||||||
26644 | 3' | -47.7 | NC_005808.1 | + | 13750 | 0.69 | 0.878375 |
Target: 5'- -gGACGCcGACGACAUCcucacGGUGCGcgucauaucACCa -3' miRNA: 3'- ugUUGCGuCUGUUGUAG-----UUACGC---------UGG- -5' |
|||||||
26644 | 3' | -47.7 | NC_005808.1 | + | 13390 | 0.69 | 0.878375 |
Target: 5'- cCAGCGCgcgguuguAGGCGGCAUCGuUGCGGu- -3' miRNA: 3'- uGUUGCG--------UCUGUUGUAGUuACGCUgg -5' |
|||||||
26644 | 3' | -47.7 | NC_005808.1 | + | 17224 | 0.69 | 0.88568 |
Target: 5'- -gGGCGCAucGACGACGUgaaguacCAAaGCGGCCu -3' miRNA: 3'- ugUUGCGU--CUGUUGUA-------GUUaCGCUGG- -5' |
|||||||
26644 | 3' | -47.7 | NC_005808.1 | + | 18979 | 0.69 | 0.886477 |
Target: 5'- cCAGCGCGGGCGccgaccuCAUCGAccUGaUGACCc -3' miRNA: 3'- uGUUGCGUCUGUu------GUAGUU--AC-GCUGG- -5' |
|||||||
26644 | 3' | -47.7 | NC_005808.1 | + | 36915 | 0.69 | 0.886477 |
Target: 5'- cCAGCGCgccGGGCAGCG--AGUGCG-CCa -3' miRNA: 3'- uGUUGCG---UCUGUUGUagUUACGCuGG- -5' |
|||||||
26644 | 3' | -47.7 | NC_005808.1 | + | 19046 | 0.69 | 0.886477 |
Target: 5'- aGCGGcCGCcGGCGGCGUCGAUcaGCGugUc -3' miRNA: 3'- -UGUU-GCGuCUGUUGUAGUUA--CGCugG- -5' |
|||||||
26644 | 3' | -47.7 | NC_005808.1 | + | 24539 | 0.69 | 0.889634 |
Target: 5'- -uGGCGCAGGcCAagcagcaggucgucgGCGUCAAUGUcGCCg -3' miRNA: 3'- ugUUGCGUCU-GU---------------UGUAGUUACGcUGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home