miRNA display CGI


Results 41 - 60 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26644 3' -47.7 NC_005808.1 + 10062 0.68 0.922367
Target:  5'- aAUAGCGUccgAGGCGuCGUCGggGCGAgCCg -3'
miRNA:   3'- -UGUUGCG---UCUGUuGUAGUuaCGCU-GG- -5'
26644 3' -47.7 NC_005808.1 + 11137 0.71 0.802732
Target:  5'- cGCGACcCGGACAcguucgaGCAguucgucgcCAAUGCGGCCg -3'
miRNA:   3'- -UGUUGcGUCUGU-------UGUa--------GUUACGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 11228 0.73 0.692773
Target:  5'- cCAGCGCAcGCAACGUgCGcagGCGGCCc -3'
miRNA:   3'- uGUUGCGUcUGUUGUA-GUua-CGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 11355 0.66 0.970257
Target:  5'- uGCAguACGguGGCGaccugcucgcccgGCAccUCGGUGgCGACCu -3'
miRNA:   3'- -UGU--UGCguCUGU-------------UGU--AGUUAC-GCUGG- -5'
26644 3' -47.7 NC_005808.1 + 11569 0.73 0.66931
Target:  5'- cCAGCGCAGGCGcuGCccuuugcgguGUCGcagGCGACCa -3'
miRNA:   3'- uGUUGCGUCUGU--UG----------UAGUua-CGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 11917 0.66 0.959312
Target:  5'- -uGGCGCGGGguucgcccaggcCAACcgCGGcGCGGCCg -3'
miRNA:   3'- ugUUGCGUCU------------GUUGuaGUUaCGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 12027 0.69 0.894278
Target:  5'- gACAACGUGGACAACA------UGACCg -3'
miRNA:   3'- -UGUUGCGUCUGUUGUaguuacGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 12485 0.72 0.727426
Target:  5'- gACAGCGCcaccaaGGACGGCAUCAA---GGCCg -3'
miRNA:   3'- -UGUUGCG------UCUGUUGUAGUUacgCUGG- -5'
26644 3' -47.7 NC_005808.1 + 12622 0.68 0.908953
Target:  5'- cCGACGCGcuCGGCAUCGcUGCuGCCg -3'
miRNA:   3'- uGUUGCGUcuGUUGUAGUuACGcUGG- -5'
26644 3' -47.7 NC_005808.1 + 12704 0.69 0.894278
Target:  5'- cCGACGCcaaaGGACGGCAgcagCGAUGcCGAgCg -3'
miRNA:   3'- uGUUGCG----UCUGUUGUa---GUUAC-GCUgG- -5'
26644 3' -47.7 NC_005808.1 + 13020 0.77 0.439733
Target:  5'- cGCAGCGCAGugGCGACGgccucgUCAucgcguugcuugaGUGCGGCCg -3'
miRNA:   3'- -UGUUGCGUC--UGUUGU------AGU-------------UACGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 13252 0.66 0.970592
Target:  5'- uACAACGCcGGCcaagGGCGccCAGcGCGGCCg -3'
miRNA:   3'- -UGUUGCGuCUG----UUGUa-GUUaCGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 13390 0.69 0.878375
Target:  5'- cCAGCGCgcgguuguAGGCGGCAUCGuUGCGGu- -3'
miRNA:   3'- uGUUGCG--------UCUGUUGUAGUuACGCUgg -5'
26644 3' -47.7 NC_005808.1 + 13469 0.66 0.967116
Target:  5'- cGCggUGuCGGGCAugAccugggCGAUGcCGACCg -3'
miRNA:   3'- -UGuuGC-GUCUGUugUa-----GUUAC-GCUGG- -5'
26644 3' -47.7 NC_005808.1 + 13613 0.71 0.793371
Target:  5'- aACcuUGCcGACAGCAUCGGUaGCGGCa -3'
miRNA:   3'- -UGuuGCGuCUGUUGUAGUUA-CGCUGg -5'
26644 3' -47.7 NC_005808.1 + 13621 0.67 0.95032
Target:  5'- aACAuCGCcGugGGCAcCGAgucagGCGGCCg -3'
miRNA:   3'- -UGUuGCGuCugUUGUaGUUa----CGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 13750 0.69 0.878375
Target:  5'- -gGACGCcGACGACAUCcucacGGUGCGcgucauaucACCa -3'
miRNA:   3'- ugUUGCGuCUGUUGUAG-----UUACGC---------UGG- -5'
26644 3' -47.7 NC_005808.1 + 14355 0.7 0.823905
Target:  5'- aACGACGUGGGCcGCAUCGccgacagcaugGUGCagcaGGCCa -3'
miRNA:   3'- -UGUUGCGUCUGuUGUAGU-----------UACG----CUGG- -5'
26644 3' -47.7 NC_005808.1 + 14745 0.66 0.967116
Target:  5'- gGCAguacGCGCAGcauuggcgcGCAGCGugUCGGUGuCGAUCu -3'
miRNA:   3'- -UGU----UGCGUC---------UGUUGU--AGUUAC-GCUGG- -5'
26644 3' -47.7 NC_005808.1 + 15048 0.68 0.928595
Target:  5'- nCAAUGCcGACGcCAUUcugGCGACCg -3'
miRNA:   3'- uGUUGCGuCUGUuGUAGuuaCGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.