miRNA display CGI


Results 21 - 40 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26644 3' -47.7 NC_005808.1 + 5241 0.74 0.622
Target:  5'- gACGACguGCAGGCGgugGCAggCAAUGCGGCa -3'
miRNA:   3'- -UGUUG--CGUCUGU---UGUa-GUUACGCUGg -5'
26644 3' -47.7 NC_005808.1 + 5340 0.71 0.803762
Target:  5'- gACAACGCc-GCgAACAUCAAcacgGUGGCCg -3'
miRNA:   3'- -UGUUGCGucUG-UUGUAGUUa---CGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 5481 0.73 0.681068
Target:  5'- gGCAACGUGGACAcgguugcugaaaACAUCg--GCGACg -3'
miRNA:   3'- -UGUUGCGUCUGU------------UGUAGuuaCGCUGg -5'
26644 3' -47.7 NC_005808.1 + 5630 0.68 0.901771
Target:  5'- nCAGCGUuGGCGcCGUCGAUaccguggcggGCGACCu -3'
miRNA:   3'- uGUUGCGuCUGUuGUAGUUA----------CGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 5658 0.74 0.610167
Target:  5'- aACGAgGCGGACAucgACA-CGGUgGCGGCCa -3'
miRNA:   3'- -UGUUgCGUCUGU---UGUaGUUA-CGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 6047 0.66 0.973797
Target:  5'- aGCGACGCAGACggUGUgGAauccaccuUGACCc -3'
miRNA:   3'- -UGUUGCGUCUGuuGUAgUUac------GCUGG- -5'
26644 3' -47.7 NC_005808.1 + 7204 0.72 0.715966
Target:  5'- gACAGCGCGauguccacGGCAGCAUC--UGCG-CCg -3'
miRNA:   3'- -UGUUGCGU--------CUGUUGUAGuuACGCuGG- -5'
26644 3' -47.7 NC_005808.1 + 7831 0.67 0.95032
Target:  5'- cCGGCGCAGAUcGCGcCGGUGCuGCa -3'
miRNA:   3'- uGUUGCGUCUGuUGUaGUUACGcUGg -5'
26644 3' -47.7 NC_005808.1 + 7879 0.71 0.793371
Target:  5'- gGCAACGaGGGCAACAUCca-GCG-CCu -3'
miRNA:   3'- -UGUUGCgUCUGUUGUAGuuaCGCuGG- -5'
26644 3' -47.7 NC_005808.1 + 8047 0.7 0.861299
Target:  5'- -gAGCGCGG-CGACAUggaaaccaCGAUGCGcGCCg -3'
miRNA:   3'- ugUUGCGUCuGUUGUA--------GUUACGC-UGG- -5'
26644 3' -47.7 NC_005808.1 + 8115 0.67 0.944849
Target:  5'- -gGGCGCgcgucauGGACGGCggCAAggacgGCGGCCc -3'
miRNA:   3'- ugUUGCG-------UCUGUUGuaGUUa----CGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 8118 0.66 0.963359
Target:  5'- uGCAccGCGCGGcCGGCGUUggUuguggGCGugCg -3'
miRNA:   3'- -UGU--UGCGUCuGUUGUAGuuA-----CGCugG- -5'
26644 3' -47.7 NC_005808.1 + 8576 0.67 0.95032
Target:  5'- gGCGuCGUAGGCcGCGc--GUGCGGCCu -3'
miRNA:   3'- -UGUuGCGUCUGuUGUaguUACGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 8626 0.74 0.622
Target:  5'- uACGACGCccaGGAUGAgGUCGAgcGCGGCCu -3'
miRNA:   3'- -UGUUGCG---UCUGUUgUAGUUa-CGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 8744 0.68 0.922367
Target:  5'- cCAACGCcgAGgucgcGCGGCAcgCAAUGcCGACCg -3'
miRNA:   3'- uGUUGCG--UC-----UGUUGUa-GUUAC-GCUGG- -5'
26644 3' -47.7 NC_005808.1 + 8854 0.66 0.967116
Target:  5'- cCGGCGCGGcCGACccAUCG-UGCG-CCg -3'
miRNA:   3'- uGUUGCGUCuGUUG--UAGUuACGCuGG- -5'
26644 3' -47.7 NC_005808.1 + 9256 0.66 0.963359
Target:  5'- cGCcgaGCAGGcCAACGUCGAcgGCG-CCa -3'
miRNA:   3'- -UGuugCGUCU-GUUGUAGUUa-CGCuGG- -5'
26644 3' -47.7 NC_005808.1 + 9336 0.68 0.924897
Target:  5'- cGCGGCGgGcGGCGGCAUCcuuuugcaguugcuuGAugaUGCGGCCg -3'
miRNA:   3'- -UGUUGCgU-CUGUUGUAG---------------UU---ACGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 9453 0.66 0.973797
Target:  5'- cGCGACauGCAGugGcuGCA-CAAUgcacGCGGCCg -3'
miRNA:   3'- -UGUUG--CGUCugU--UGUaGUUA----CGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 9513 0.69 0.878375
Target:  5'- cCGugGCGaACAgugGCAUCAugcUGCGGCCc -3'
miRNA:   3'- uGUugCGUcUGU---UGUAGUu--ACGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.