miRNA display CGI


Results 21 - 40 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26644 3' -47.7 NC_005808.1 + 34216 0.7 0.861299
Target:  5'- uCGGCGCGauGuCGGCGUCGAgGUGGCCu -3'
miRNA:   3'- uGUUGCGU--CuGUUGUAGUUaCGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 34094 0.79 0.361884
Target:  5'- gGCAGCGaCAGGCGcgACAcgacggUCAcgGCGACCg -3'
miRNA:   3'- -UGUUGC-GUCUGU--UGU------AGUuaCGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 33683 0.66 0.970592
Target:  5'- cGCAGCGguGGCcguGCcgCcaGcgGUGGCCg -3'
miRNA:   3'- -UGUUGCguCUGu--UGuaG--UuaCGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 33150 0.66 0.967116
Target:  5'- -gGAUGUAGGCcgccGCGUCGcugcGCGACCc -3'
miRNA:   3'- ugUUGCGUCUGu---UGUAGUua--CGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 32933 0.67 0.954968
Target:  5'- -gGGCGC-GACAAUcUCGGcgccgaccgucUGCGGCCa -3'
miRNA:   3'- ugUUGCGuCUGUUGuAGUU-----------ACGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 32920 0.66 0.970592
Target:  5'- cACGGCcuGCAcGGCGGCuguUCGGccaggGCGACCa -3'
miRNA:   3'- -UGUUG--CGU-CUGUUGu--AGUUa----CGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 32886 0.68 0.922367
Target:  5'- --cGCGCccgacuggaaGGACAACAagAAcUGCGGCCa -3'
miRNA:   3'- uguUGCG----------UCUGUUGUagUU-ACGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 32710 0.67 0.934503
Target:  5'- cGCGGCGCcgaacuucgacaGGACAGCAccgCGGcgucGCGGCCc -3'
miRNA:   3'- -UGUUGCG------------UCUGUUGUa--GUUa---CGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 32645 0.66 0.967116
Target:  5'- cACAGCGUcGGCGguguccugauACGUCGGaGCGGCa -3'
miRNA:   3'- -UGUUGCGuCUGU----------UGUAGUUaCGCUGg -5'
26644 3' -47.7 NC_005808.1 + 31286 0.66 0.973797
Target:  5'- cCGACGU-GGCAGCGaagCcugGCGACCg -3'
miRNA:   3'- uGUUGCGuCUGUUGUa--GuuaCGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 29969 0.75 0.574847
Target:  5'- cGCGGCGCAcGACGGCcUgGAUGCaGCCg -3'
miRNA:   3'- -UGUUGCGU-CUGUUGuAgUUACGcUGG- -5'
26644 3' -47.7 NC_005808.1 + 29284 0.66 0.967116
Target:  5'- gACGugGUAGGCGACGaac-UGCuGGCCc -3'
miRNA:   3'- -UGUugCGUCUGUUGUaguuACG-CUGG- -5'
26644 3' -47.7 NC_005808.1 + 28916 0.7 0.85234
Target:  5'- cGCGGCGCugGGACAGCuucggCAAgucCGGCCg -3'
miRNA:   3'- -UGUUGCG--UCUGUUGua---GUUac-GCUGG- -5'
26644 3' -47.7 NC_005808.1 + 28815 0.67 0.954968
Target:  5'- aGCAGC-CAGcGCGcCGUCGucggguUGCGGCCg -3'
miRNA:   3'- -UGUUGcGUC-UGUuGUAGUu-----ACGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 28774 0.69 0.894278
Target:  5'- cGCGuGCGCcGACAGCAUCGAccuUGUGAa- -3'
miRNA:   3'- -UGU-UGCGuCUGUUGUAGUU---ACGCUgg -5'
26644 3' -47.7 NC_005808.1 + 28235 0.68 0.928595
Target:  5'- -gGGCGUGGGCAACggcgugGUCGAUcUGACCa -3'
miRNA:   3'- ugUUGCGUCUGUUG------UAGUUAcGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 28087 0.66 0.970592
Target:  5'- gGCGACGCcGACAugAUCGGcuucuuccaGCG-CCu -3'
miRNA:   3'- -UGUUGCGuCUGUugUAGUUa--------CGCuGG- -5'
26644 3' -47.7 NC_005808.1 + 27926 0.72 0.738775
Target:  5'- gGCgAGCGCGGACAcguucuugaGCAgCGGcGCGGCCg -3'
miRNA:   3'- -UG-UUGCGUCUGU---------UGUaGUUaCGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 27877 0.67 0.934503
Target:  5'- gGCAGCGCGcgcGAgGACGUgc-UGCGGCUg -3'
miRNA:   3'- -UGUUGCGU---CUgUUGUAguuACGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 27596 0.66 0.960966
Target:  5'- gGCGGCGcCAGAUGGCGUggucgucgcccuugaCGAUG-GGCCg -3'
miRNA:   3'- -UGUUGC-GUCUGUUGUA---------------GUUACgCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.