miRNA display CGI


Results 1 - 20 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26644 3' -47.7 NC_005808.1 + 41607 0.66 0.973797
Target:  5'- -uGGCGCGGGCAGCGggcugaCGGUGaagGGCUg -3'
miRNA:   3'- ugUUGCGUCUGUUGUa-----GUUACg--CUGG- -5'
26644 3' -47.7 NC_005808.1 + 41559 0.69 0.86998
Target:  5'- gGCGGCgGUAGGCGGCAaaggcuugccgUCGAUcaugagcaGCGGCCg -3'
miRNA:   3'- -UGUUG-CGUCUGUUGU-----------AGUUA--------CGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 40485 0.71 0.77202
Target:  5'- aACGGCGCAaucuauaccGACGACAcg---GCGACCa -3'
miRNA:   3'- -UGUUGCGU---------CUGUUGUaguuaCGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 39866 0.68 0.915819
Target:  5'- aGCAGCGcCGGGCcGCGcUCAA-GCGuCCg -3'
miRNA:   3'- -UGUUGC-GUCUGuUGU-AGUUaCGCuGG- -5'
26644 3' -47.7 NC_005808.1 + 39048 0.68 0.908953
Target:  5'- uGCGGCGCGGuuGGCGggacugCGcgguGUGCGGCUg -3'
miRNA:   3'- -UGUUGCGUCugUUGUa-----GU----UACGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 38402 0.68 0.922367
Target:  5'- gACGugcuCGCGGcCAACAugcccgccaUCGAgGCGGCCg -3'
miRNA:   3'- -UGUu---GCGUCuGUUGU---------AGUUaCGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 38280 0.67 0.942237
Target:  5'- cGCAGC-CAGGCGcCGUCGcgccgggccuugagcGUGCGGCa -3'
miRNA:   3'- -UGUUGcGUCUGUuGUAGU---------------UACGCUGg -5'
26644 3' -47.7 NC_005808.1 + 37896 0.68 0.922367
Target:  5'- gGCuACGaGGGCGGCGUCGGUGCcuuucuACCg -3'
miRNA:   3'- -UGuUGCgUCUGUUGUAGUUACGc-----UGG- -5'
26644 3' -47.7 NC_005808.1 + 37644 0.67 0.954968
Target:  5'- aGCAGCGCGauacgcGGCuGCAUCGugGCGcCCg -3'
miRNA:   3'- -UGUUGCGU------CUGuUGUAGUuaCGCuGG- -5'
26644 3' -47.7 NC_005808.1 + 37566 0.68 0.915819
Target:  5'- gGCGGC-CGGccCAGCGUcCGGUGCGGCUg -3'
miRNA:   3'- -UGUUGcGUCu-GUUGUA-GUUACGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 37518 0.67 0.940091
Target:  5'- uGCcGCGCAGGCGGcCGUCGcUGCucacGCCc -3'
miRNA:   3'- -UGuUGCGUCUGUU-GUAGUuACGc---UGG- -5'
26644 3' -47.7 NC_005808.1 + 37327 0.68 0.928595
Target:  5'- -uGGCGCAGcAUGGCAUCGcgcUGCGugGCCg -3'
miRNA:   3'- ugUUGCGUC-UGUUGUAGUu--ACGC--UGG- -5'
26644 3' -47.7 NC_005808.1 + 37244 0.69 0.894278
Target:  5'- cGCggUGCAGGCGGCcacgCAGcGCGAUg -3'
miRNA:   3'- -UGuuGCGUCUGUUGua--GUUaCGCUGg -5'
26644 3' -47.7 NC_005808.1 + 37223 0.77 0.472786
Target:  5'- gGCGGCGUGGGCGAgGUCGGUauCGACCa -3'
miRNA:   3'- -UGUUGCGUCUGUUgUAGUUAc-GCUGG- -5'
26644 3' -47.7 NC_005808.1 + 36915 0.69 0.886477
Target:  5'- cCAGCGCgccGGGCAGCG--AGUGCG-CCa -3'
miRNA:   3'- uGUUGCG---UCUGUUGUagUUACGCuGG- -5'
26644 3' -47.7 NC_005808.1 + 36087 0.67 0.956741
Target:  5'- -gGGCGCAgGACAacaacuacggcaagcGCGUgAAUGCgGGCCu -3'
miRNA:   3'- ugUUGCGU-CUGU---------------UGUAgUUACG-CUGG- -5'
26644 3' -47.7 NC_005808.1 + 35890 0.7 0.833632
Target:  5'- aGCAgauGCGCgcccaGGACAaggugugccuGCA-CGAUGCGACCu -3'
miRNA:   3'- -UGU---UGCG-----UCUGU----------UGUaGUUACGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 35345 0.69 0.878375
Target:  5'- cACAAgGCcGGCGACAUCGGcccGCG-CCa -3'
miRNA:   3'- -UGUUgCGuCUGUUGUAGUUa--CGCuGG- -5'
26644 3' -47.7 NC_005808.1 + 35284 0.66 0.959312
Target:  5'- cCAGCgGCGGGCAc---CGcgGCGACCu -3'
miRNA:   3'- uGUUG-CGUCUGUuguaGUuaCGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 34851 0.66 0.973797
Target:  5'- cACu-CGCuGAUAugGUCGAggcGCGGCUg -3'
miRNA:   3'- -UGuuGCGuCUGUugUAGUUa--CGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.