miRNA display CGI


Results 1 - 20 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26644 3' -47.7 NC_005808.1 + 5190 1.14 0.002009
Target:  5'- gACAACGCAGACAACAUCAAUGCGACCg -3'
miRNA:   3'- -UGUUGCGUCUGUUGUAGUUACGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 5130 0.83 0.228857
Target:  5'- gGCAAUGCcGACAACAUCAAUGCaGCg -3'
miRNA:   3'- -UGUUGCGuCUGUUGUAGUUACGcUGg -5'
26644 3' -47.7 NC_005808.1 + 34094 0.79 0.361884
Target:  5'- gGCAGCGaCAGGCGcgACAcgacggUCAcgGCGACCg -3'
miRNA:   3'- -UGUUGC-GUCUGU--UGU------AGUuaCGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 13020 0.77 0.439733
Target:  5'- cGCAGCGCAGugGCGACGgccucgUCAucgcguugcuugaGUGCGGCCg -3'
miRNA:   3'- -UGUUGCGUC--UGUUGU------AGU-------------UACGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 37223 0.77 0.472786
Target:  5'- gGCGGCGUGGGCGAgGUCGGUauCGACCa -3'
miRNA:   3'- -UGUUGCGUCUGUUgUAGUUAc-GCUGG- -5'
26644 3' -47.7 NC_005808.1 + 4685 0.76 0.540014
Target:  5'- gGCAGCGCGGGcCAACAUUGGccugGCuGACCu -3'
miRNA:   3'- -UGUUGCGUCU-GUUGUAGUUa---CG-CUGG- -5'
26644 3' -47.7 NC_005808.1 + 15333 0.75 0.563168
Target:  5'- gGCGACaGCGGGCAACuGUUuGUGCGGCa -3'
miRNA:   3'- -UGUUG-CGUCUGUUG-UAGuUACGCUGg -5'
26644 3' -47.7 NC_005808.1 + 4240 0.75 0.574847
Target:  5'- -aGACGUAGAUGGCguaGUCGGUGcCGGCCg -3'
miRNA:   3'- ugUUGCGUCUGUUG---UAGUUAC-GCUGG- -5'
26644 3' -47.7 NC_005808.1 + 29969 0.75 0.574847
Target:  5'- cGCGGCGCAcGACGGCcUgGAUGCaGCCg -3'
miRNA:   3'- -UGUUGCGU-CUGUUGuAgUUACGcUGG- -5'
26644 3' -47.7 NC_005808.1 + 5084 0.75 0.579534
Target:  5'- uCAACGCAGuagucgguaaugccaACAAUAUCAAUGCGGu- -3'
miRNA:   3'- uGUUGCGUC---------------UGUUGUAGUUACGCUgg -5'
26644 3' -47.7 NC_005808.1 + 5658 0.74 0.610167
Target:  5'- aACGAgGCGGACAucgACA-CGGUgGCGGCCa -3'
miRNA:   3'- -UGUUgCGUCUGU---UGUaGUUA-CGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 5241 0.74 0.622
Target:  5'- gACGACguGCAGGCGgugGCAggCAAUGCGGCa -3'
miRNA:   3'- -UGUUG--CGUCUGU---UGUa-GUUACGCUGg -5'
26644 3' -47.7 NC_005808.1 + 8626 0.74 0.622
Target:  5'- uACGACGCccaGGAUGAgGUCGAgcGCGGCCu -3'
miRNA:   3'- -UGUUGCG---UCUGUUgUAGUUa-CGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 18465 0.74 0.650417
Target:  5'- cGCGGCGCcGGCGGCGUCGgccgauucguccaccGUGaUGACCa -3'
miRNA:   3'- -UGUUGCGuCUGUUGUAGU---------------UAC-GCUGG- -5'
26644 3' -47.7 NC_005808.1 + 11569 0.73 0.66931
Target:  5'- cCAGCGCAGGCGcuGCccuuugcgguGUCGcagGCGACCa -3'
miRNA:   3'- uGUUGCGUCUGU--UG----------UAGUua-CGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 5481 0.73 0.681068
Target:  5'- gGCAACGUGGACAcgguugcugaaaACAUCg--GCGACg -3'
miRNA:   3'- -UGUUGCGUCUGU------------UGUAGuuaCGCUGg -5'
26644 3' -47.7 NC_005808.1 + 11228 0.73 0.692773
Target:  5'- cCAGCGCAcGCAACGUgCGcagGCGGCCc -3'
miRNA:   3'- uGUUGCGUcUGUUGUA-GUua-CGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 26882 0.73 0.704411
Target:  5'- aGCAAgGCuGACGGCA---GUGUGACCu -3'
miRNA:   3'- -UGUUgCGuCUGUUGUaguUACGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 7204 0.72 0.715966
Target:  5'- gACAGCGCGauguccacGGCAGCAUC--UGCG-CCg -3'
miRNA:   3'- -UGUUGCGU--------CUGUUGUAGuuACGCuGG- -5'
26644 3' -47.7 NC_005808.1 + 16228 0.72 0.727426
Target:  5'- cCGACGCGGuaacgcccacCAcCAUCAgcGUGCGGCCg -3'
miRNA:   3'- uGUUGCGUCu---------GUuGUAGU--UACGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.