miRNA display CGI


Results 1 - 20 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26644 3' -47.7 NC_005808.1 + 9513 0.69 0.878375
Target:  5'- cCGugGCGaACAgugGCAUCAugcUGCGGCCc -3'
miRNA:   3'- uGUugCGUcUGU---UGUAGUu--ACGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 20323 0.71 0.803762
Target:  5'- uGCGAUGCGGGCuggccuucaGugGUCGuUGCGGCUu -3'
miRNA:   3'- -UGUUGCGUCUG---------UugUAGUuACGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 21454 0.71 0.813944
Target:  5'- uGCGGCGgGGGCGGCAg-GAUGuUGGCCu -3'
miRNA:   3'- -UGUUGCgUCUGUUGUagUUAC-GCUGG- -5'
26644 3' -47.7 NC_005808.1 + 3744 0.7 0.823905
Target:  5'- -gGugGUGGGC-ACGUCGGUGCcGCCg -3'
miRNA:   3'- ugUugCGUCUGuUGUAGUUACGcUGG- -5'
26644 3' -47.7 NC_005808.1 + 22295 0.7 0.832671
Target:  5'- cACGGCGUcgaagucGGGCAGCA-CGAUGCugcuGGCCg -3'
miRNA:   3'- -UGUUGCG-------UCUGUUGUaGUUACG----CUGG- -5'
26644 3' -47.7 NC_005808.1 + 35890 0.7 0.833632
Target:  5'- aGCAgauGCGCgcccaGGACAaggugugccuGCA-CGAUGCGACCu -3'
miRNA:   3'- -UGU---UGCG-----UCUGU----------UGUaGUUACGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 16251 0.7 0.843115
Target:  5'- gAUAugGCGGAUGGCGUUGGccucgcgcGCGGCCa -3'
miRNA:   3'- -UGUugCGUCUGUUGUAGUUa-------CGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 24557 0.7 0.85234
Target:  5'- cGCAGCGCGG-CGAUggCGAgGcCGGCCa -3'
miRNA:   3'- -UGUUGCGUCuGUUGuaGUUaC-GCUGG- -5'
26644 3' -47.7 NC_005808.1 + 4452 0.69 0.86998
Target:  5'- cCAGCGguGGCAcCGUC-AUGCacaacGACCg -3'
miRNA:   3'- uGUUGCguCUGUuGUAGuUACG-----CUGG- -5'
26644 3' -47.7 NC_005808.1 + 13613 0.71 0.793371
Target:  5'- aACcuUGCcGACAGCAUCGGUaGCGGCa -3'
miRNA:   3'- -UGuuGCGuCUGUUGUAGUUA-CGCUGg -5'
26644 3' -47.7 NC_005808.1 + 3559 0.71 0.787043
Target:  5'- aACAGCGCAG-CAGCGggcugggcguacacCGAUccGCGGCCg -3'
miRNA:   3'- -UGUUGCGUCuGUUGUa-------------GUUA--CGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 23651 0.71 0.782786
Target:  5'- cCGGCgGCGGGCAGCAacugCAccagGCGACCc -3'
miRNA:   3'- uGUUG-CGUCUGUUGUa---GUua--CGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 4240 0.75 0.574847
Target:  5'- -aGACGUAGAUGGCguaGUCGGUGcCGGCCg -3'
miRNA:   3'- ugUUGCGUCUGUUG---UAGUUAC-GCUGG- -5'
26644 3' -47.7 NC_005808.1 + 29969 0.75 0.574847
Target:  5'- cGCGGCGCAcGACGGCcUgGAUGCaGCCg -3'
miRNA:   3'- -UGUUGCGU-CUGUUGuAgUUACGcUGG- -5'
26644 3' -47.7 NC_005808.1 + 18465 0.74 0.650417
Target:  5'- cGCGGCGCcGGCGGCGUCGgccgauucguccaccGUGaUGACCa -3'
miRNA:   3'- -UGUUGCGuCUGUUGUAGU---------------UAC-GCUGG- -5'
26644 3' -47.7 NC_005808.1 + 26882 0.73 0.704411
Target:  5'- aGCAAgGCuGACGGCA---GUGUGACCu -3'
miRNA:   3'- -UGUUgCGuCUGUUGUaguUACGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 7204 0.72 0.715966
Target:  5'- gACAGCGCGauguccacGGCAGCAUC--UGCG-CCg -3'
miRNA:   3'- -UGUUGCGU--------CUGUUGUAGuuACGCuGG- -5'
26644 3' -47.7 NC_005808.1 + 18713 0.72 0.748884
Target:  5'- aGCAGCGCAucgguacGGCGGCAcgggaugccgUCGAacGCGACCa -3'
miRNA:   3'- -UGUUGCGU-------CUGUUGU----------AGUUa-CGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 18969 0.72 0.75
Target:  5'- gGCGAUGCGGACGACGUaacgcCAGUcGCGcagggucagGCCg -3'
miRNA:   3'- -UGUUGCGUCUGUUGUA-----GUUA-CGC---------UGG- -5'
26644 3' -47.7 NC_005808.1 + 40485 0.71 0.77202
Target:  5'- aACGGCGCAaucuauaccGACGACAcg---GCGACCa -3'
miRNA:   3'- -UGUUGCGU---------CUGUUGUaguuaCGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.