miRNA display CGI


Results 1 - 20 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26644 3' -47.7 NC_005808.1 + 621 0.68 0.915819
Target:  5'- aGCAGCGCcguGGACAcggcguccgGCGUCGAgucgGUGcCCa -3'
miRNA:   3'- -UGUUGCG---UCUGU---------UGUAGUUa---CGCuGG- -5'
26644 3' -47.7 NC_005808.1 + 1460 0.66 0.967116
Target:  5'- gACGGCGCGGuCGGCGgccUCcugGCaGGCCg -3'
miRNA:   3'- -UGUUGCGUCuGUUGU---AGuuaCG-CUGG- -5'
26644 3' -47.7 NC_005808.1 + 2154 0.67 0.933926
Target:  5'- -gGGCGCgcuacauGGACGACAUCGuggugcuggGCGACg -3'
miRNA:   3'- ugUUGCG-------UCUGUUGUAGUua-------CGCUGg -5'
26644 3' -47.7 NC_005808.1 + 2375 0.69 0.878375
Target:  5'- cACGugGCAGACGcCcgC-GUGCGuACCc -3'
miRNA:   3'- -UGUugCGUCUGUuGuaGuUACGC-UGG- -5'
26644 3' -47.7 NC_005808.1 + 3514 0.67 0.954968
Target:  5'- -gGGCGC--GCGGCGUC--UGUGACCa -3'
miRNA:   3'- ugUUGCGucUGUUGUAGuuACGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 3559 0.71 0.787043
Target:  5'- aACAGCGCAG-CAGCGggcugggcguacacCGAUccGCGGCCg -3'
miRNA:   3'- -UGUUGCGUCuGUUGUa-------------GUUA--CGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 3744 0.7 0.823905
Target:  5'- -gGugGUGGGC-ACGUCGGUGCcGCCg -3'
miRNA:   3'- ugUugCGUCUGuUGUAGUUACGcUGG- -5'
26644 3' -47.7 NC_005808.1 + 4172 0.67 0.954517
Target:  5'- uGCAGCGCAGGCuggcggaAACAcCAcgGCgcaGAUCa -3'
miRNA:   3'- -UGUUGCGUCUG-------UUGUaGUuaCG---CUGG- -5'
26644 3' -47.7 NC_005808.1 + 4213 0.66 0.967116
Target:  5'- cGCAAgGUGGGCGGCuUCcacuAUGCG-CCg -3'
miRNA:   3'- -UGUUgCGUCUGUUGuAGu---UACGCuGG- -5'
26644 3' -47.7 NC_005808.1 + 4240 0.75 0.574847
Target:  5'- -aGACGUAGAUGGCguaGUCGGUGcCGGCCg -3'
miRNA:   3'- ugUUGCGUCUGUUG---UAGUUAC-GCUGG- -5'
26644 3' -47.7 NC_005808.1 + 4331 0.68 0.915819
Target:  5'- cACGAUGguGcCAGCcUUGAUGCuGGCCg -3'
miRNA:   3'- -UGUUGCguCuGUUGuAGUUACG-CUGG- -5'
26644 3' -47.7 NC_005808.1 + 4411 0.72 0.761087
Target:  5'- gGCAACGCAacGGcCAGCAUCAAggcugGC-ACCa -3'
miRNA:   3'- -UGUUGCGU--CU-GUUGUAGUUa----CGcUGG- -5'
26644 3' -47.7 NC_005808.1 + 4452 0.69 0.86998
Target:  5'- cCAGCGguGGCAcCGUC-AUGCacaacGACCg -3'
miRNA:   3'- uGUUGCguCUGUuGUAGuUACG-----CUGG- -5'
26644 3' -47.7 NC_005808.1 + 4685 0.76 0.540014
Target:  5'- gGCAGCGCGGGcCAACAUUGGccugGCuGACCu -3'
miRNA:   3'- -UGUUGCGUCU-GUUGUAGUUa---CG-CUGG- -5'
26644 3' -47.7 NC_005808.1 + 4825 0.69 0.894278
Target:  5'- gGCgAACGCcGAgAACAUCGcgGCcguGGCCg -3'
miRNA:   3'- -UG-UUGCGuCUgUUGUAGUuaCG---CUGG- -5'
26644 3' -47.7 NC_005808.1 + 4882 0.66 0.970592
Target:  5'- cCAGCGCGG-CGACg-----GCGGCCu -3'
miRNA:   3'- uGUUGCGUCuGUUGuaguuaCGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 4923 0.67 0.944849
Target:  5'- gGCAACGaccugacCGGGCAACcuauggucAUCGAcuacgGCGACCu -3'
miRNA:   3'- -UGUUGC-------GUCUGUUG--------UAGUUa----CGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 5084 0.75 0.579534
Target:  5'- uCAACGCAGuagucgguaaugccaACAAUAUCAAUGCGGu- -3'
miRNA:   3'- uGUUGCGUC---------------UGUUGUAGUUACGCUgg -5'
26644 3' -47.7 NC_005808.1 + 5130 0.83 0.228857
Target:  5'- gGCAAUGCcGACAACAUCAAUGCaGCg -3'
miRNA:   3'- -UGUUGCGuCUGUUGUAGUUACGcUGg -5'
26644 3' -47.7 NC_005808.1 + 5190 1.14 0.002009
Target:  5'- gACAACGCAGACAACAUCAAUGCGACCg -3'
miRNA:   3'- -UGUUGCGUCUGUUGUAGUUACGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.