Results 21 - 40 of 138 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26644 | 3' | -47.7 | NC_005808.1 | + | 18148 | 0.66 | 0.967116 |
Target: 5'- gGCucGCGCAGcuugccgaaAUAGCccuguuUCAGUGCGAUCa -3' miRNA: 3'- -UGu-UGCGUC---------UGUUGu-----AGUUACGCUGG- -5' |
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26644 | 3' | -47.7 | NC_005808.1 | + | 14745 | 0.66 | 0.967116 |
Target: 5'- gGCAguacGCGCAGcauuggcgcGCAGCGugUCGGUGuCGAUCu -3' miRNA: 3'- -UGU----UGCGUC---------UGUUGU--AGUUAC-GCUGG- -5' |
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26644 | 3' | -47.7 | NC_005808.1 | + | 8118 | 0.66 | 0.963359 |
Target: 5'- uGCAccGCGCGGcCGGCGUUggUuguggGCGugCg -3' miRNA: 3'- -UGU--UGCGUCuGUUGUAGuuA-----CGCugG- -5' |
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26644 | 3' | -47.7 | NC_005808.1 | + | 27596 | 0.66 | 0.960966 |
Target: 5'- gGCGGCGcCAGAUGGCGUggucgucgcccuugaCGAUG-GGCCg -3' miRNA: 3'- -UGUUGC-GUCUGUUGUA---------------GUUACgCUGG- -5' |
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26644 | 3' | -47.7 | NC_005808.1 | + | 23193 | 0.66 | 0.959312 |
Target: 5'- gACAGCaGCAGGuCGGCcucGUCGGUGaauuCGGCCu -3' miRNA: 3'- -UGUUG-CGUCU-GUUG---UAGUUAC----GCUGG- -5' |
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26644 | 3' | -47.7 | NC_005808.1 | + | 20607 | 0.66 | 0.958891 |
Target: 5'- cCuuCGcCAGGCGGCGUCGcaggucgGUGuCGGCCu -3' miRNA: 3'- uGuuGC-GUCUGUUGUAGU-------UAC-GCUGG- -5' |
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26644 | 3' | -47.7 | NC_005808.1 | + | 33150 | 0.66 | 0.967116 |
Target: 5'- -gGAUGUAGGCcgccGCGUCGcugcGCGACCc -3' miRNA: 3'- ugUUGCGUCUGu---UGUAGUua--CGCUGG- -5' |
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26644 | 3' | -47.7 | NC_005808.1 | + | 1460 | 0.66 | 0.967116 |
Target: 5'- gACGGCGCGGuCGGCGgccUCcugGCaGGCCg -3' miRNA: 3'- -UGUUGCGUCuGUUGU---AGuuaCG-CUGG- -5' |
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26644 | 3' | -47.7 | NC_005808.1 | + | 11355 | 0.66 | 0.970257 |
Target: 5'- uGCAguACGguGGCGaccugcucgcccgGCAccUCGGUGgCGACCu -3' miRNA: 3'- -UGU--UGCguCUGU-------------UGU--AGUUAC-GCUGG- -5' |
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26644 | 3' | -47.7 | NC_005808.1 | + | 32920 | 0.66 | 0.970592 |
Target: 5'- cACGGCcuGCAcGGCGGCuguUCGGccaggGCGACCa -3' miRNA: 3'- -UGUUG--CGU-CUGUUGu--AGUUa----CGCUGG- -5' |
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26644 | 3' | -47.7 | NC_005808.1 | + | 4882 | 0.66 | 0.970592 |
Target: 5'- cCAGCGCGG-CGACg-----GCGGCCu -3' miRNA: 3'- uGUUGCGUCuGUUGuaguuaCGCUGG- -5' |
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26644 | 3' | -47.7 | NC_005808.1 | + | 8115 | 0.67 | 0.944849 |
Target: 5'- -gGGCGCgcgucauGGACGGCggCAAggacgGCGGCCc -3' miRNA: 3'- ugUUGCG-------UCUGUUGuaGUUa----CGCUGG- -5' |
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26644 | 3' | -47.7 | NC_005808.1 | + | 4172 | 0.67 | 0.954517 |
Target: 5'- uGCAGCGCAGGCuggcggaAACAcCAcgGCgcaGAUCa -3' miRNA: 3'- -UGUUGCGUCUG-------UUGUaGUuaCG---CUGG- -5' |
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26644 | 3' | -47.7 | NC_005808.1 | + | 4923 | 0.67 | 0.944849 |
Target: 5'- gGCAACGaccugacCGGGCAACcuauggucAUCGAcuacgGCGACCu -3' miRNA: 3'- -UGUUGC-------GUCUGUUG--------UAGUUa----CGCUGG- -5' |
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26644 | 3' | -47.7 | NC_005808.1 | + | 38280 | 0.67 | 0.942237 |
Target: 5'- cGCAGC-CAGGCGcCGUCGcgccgggccuugagcGUGCGGCa -3' miRNA: 3'- -UGUUGcGUCUGUuGUAGU---------------UACGCUGg -5' |
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26644 | 3' | -47.7 | NC_005808.1 | + | 13621 | 0.67 | 0.95032 |
Target: 5'- aACAuCGCcGugGGCAcCGAgucagGCGGCCg -3' miRNA: 3'- -UGUuGCGuCugUUGUaGUUa----CGCUGG- -5' |
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26644 | 3' | -47.7 | NC_005808.1 | + | 3514 | 0.67 | 0.954968 |
Target: 5'- -gGGCGC--GCGGCGUC--UGUGACCa -3' miRNA: 3'- ugUUGCGucUGUUGUAGuuACGCUGG- -5' |
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26644 | 3' | -47.7 | NC_005808.1 | + | 7831 | 0.67 | 0.95032 |
Target: 5'- cCGGCGCAGAUcGCGcCGGUGCuGCa -3' miRNA: 3'- uGUUGCGUCUGuUGUaGUUACGcUGg -5' |
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26644 | 3' | -47.7 | NC_005808.1 | + | 18253 | 0.67 | 0.95032 |
Target: 5'- aACGA-GguGACAGCAUgGAaGUGAUCg -3' miRNA: 3'- -UGUUgCguCUGUUGUAgUUaCGCUGG- -5' |
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26644 | 3' | -47.7 | NC_005808.1 | + | 32933 | 0.67 | 0.954968 |
Target: 5'- -gGGCGC-GACAAUcUCGGcgccgaccgucUGCGGCCa -3' miRNA: 3'- ugUUGCGuCUGUUGuAGUU-----------ACGCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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