miRNA display CGI


Results 21 - 40 of 138 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26644 3' -47.7 NC_005808.1 + 8118 0.66 0.963359
Target:  5'- uGCAccGCGCGGcCGGCGUUggUuguggGCGugCg -3'
miRNA:   3'- -UGU--UGCGUCuGUUGUAGuuA-----CGCugG- -5'
26644 3' -47.7 NC_005808.1 + 14745 0.66 0.967116
Target:  5'- gGCAguacGCGCAGcauuggcgcGCAGCGugUCGGUGuCGAUCu -3'
miRNA:   3'- -UGU----UGCGUC---------UGUUGU--AGUUAC-GCUGG- -5'
26644 3' -47.7 NC_005808.1 + 18148 0.66 0.967116
Target:  5'- gGCucGCGCAGcuugccgaaAUAGCccuguuUCAGUGCGAUCa -3'
miRNA:   3'- -UGu-UGCGUC---------UGUUGu-----AGUUACGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 13469 0.66 0.967116
Target:  5'- cGCggUGuCGGGCAugAccugggCGAUGcCGACCg -3'
miRNA:   3'- -UGuuGC-GUCUGUugUa-----GUUAC-GCUGG- -5'
26644 3' -47.7 NC_005808.1 + 23097 0.66 0.967116
Target:  5'- cCGACGCcaacGGCGGCGccCAcgGCGACa -3'
miRNA:   3'- uGUUGCGu---CUGUUGUa-GUuaCGCUGg -5'
26644 3' -47.7 NC_005808.1 + 29284 0.66 0.967116
Target:  5'- gACGugGUAGGCGACGaac-UGCuGGCCc -3'
miRNA:   3'- -UGUugCGUCUGUUGUaguuACG-CUGG- -5'
26644 3' -47.7 NC_005808.1 + 1460 0.66 0.967116
Target:  5'- gACGGCGCGGuCGGCGgccUCcugGCaGGCCg -3'
miRNA:   3'- -UGUUGCGUCuGUUGU---AGuuaCG-CUGG- -5'
26644 3' -47.7 NC_005808.1 + 11355 0.66 0.970257
Target:  5'- uGCAguACGguGGCGaccugcucgcccgGCAccUCGGUGgCGACCu -3'
miRNA:   3'- -UGU--UGCguCUGU-------------UGU--AGUUAC-GCUGG- -5'
26644 3' -47.7 NC_005808.1 + 4882 0.66 0.970592
Target:  5'- cCAGCGCGG-CGACg-----GCGGCCu -3'
miRNA:   3'- uGUUGCGUCuGUUGuaguuaCGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 32920 0.66 0.970592
Target:  5'- cACGGCcuGCAcGGCGGCuguUCGGccaggGCGACCa -3'
miRNA:   3'- -UGUUG--CGU-CUGUUGu--AGUUa----CGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 31286 0.66 0.973797
Target:  5'- cCGACGU-GGCAGCGaagCcugGCGACCg -3'
miRNA:   3'- uGUUGCGuCUGUUGUa--GuuaCGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 3514 0.67 0.954968
Target:  5'- -gGGCGC--GCGGCGUC--UGUGACCa -3'
miRNA:   3'- ugUUGCGucUGUUGUAGuuACGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 13621 0.67 0.95032
Target:  5'- aACAuCGCcGugGGCAcCGAgucagGCGGCCg -3'
miRNA:   3'- -UGUuGCGuCugUUGUaGUUa----CGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 7831 0.67 0.95032
Target:  5'- cCGGCGCAGAUcGCGcCGGUGCuGCa -3'
miRNA:   3'- uGUUGCGUCUGuUGUaGUUACGcUGg -5'
26644 3' -47.7 NC_005808.1 + 4172 0.67 0.954517
Target:  5'- uGCAGCGCAGGCuggcggaAACAcCAcgGCgcaGAUCa -3'
miRNA:   3'- -UGUUGCGUCUG-------UUGUaGUuaCG---CUGG- -5'
26644 3' -47.7 NC_005808.1 + 38280 0.67 0.942237
Target:  5'- cGCAGC-CAGGCGcCGUCGcgccgggccuugagcGUGCGGCa -3'
miRNA:   3'- -UGUUGcGUCUGUuGUAGU---------------UACGCUGg -5'
26644 3' -47.7 NC_005808.1 + 4923 0.67 0.944849
Target:  5'- gGCAACGaccugacCGGGCAACcuauggucAUCGAcuacgGCGACCu -3'
miRNA:   3'- -UGUUGC-------GUCUGUUG--------UAGUUa----CGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 18253 0.67 0.95032
Target:  5'- aACGA-GguGACAGCAUgGAaGUGAUCg -3'
miRNA:   3'- -UGUUgCguCUGUUGUAgUUaCGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 32933 0.67 0.954968
Target:  5'- -gGGCGC-GACAAUcUCGGcgccgaccgucUGCGGCCa -3'
miRNA:   3'- ugUUGCGuCUGUUGuAGUU-----------ACGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 28815 0.67 0.954968
Target:  5'- aGCAGC-CAGcGCGcCGUCGucggguUGCGGCCg -3'
miRNA:   3'- -UGUUGcGUC-UGUuGUAGUu-----ACGCUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.