miRNA display CGI


Results 41 - 60 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26644 3' -47.7 NC_005808.1 + 15762 0.67 0.940091
Target:  5'- cCAG-GCGGACGccuucuuCGUCGAUaGCGGCCu -3'
miRNA:   3'- uGUUgCGUCUGUu------GUAGUUA-CGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 38280 0.67 0.942237
Target:  5'- cGCAGC-CAGGCGcCGUCGcgccgggccuugagcGUGCGGCa -3'
miRNA:   3'- -UGUUGcGUCUGUuGUAGU---------------UACGCUGg -5'
26644 3' -47.7 NC_005808.1 + 8115 0.67 0.944849
Target:  5'- -gGGCGCgcgucauGGACGGCggCAAggacgGCGGCCc -3'
miRNA:   3'- ugUUGCG-------UCUGUUGuaGUUa----CGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 18253 0.67 0.95032
Target:  5'- aACGA-GguGACAGCAUgGAaGUGAUCg -3'
miRNA:   3'- -UGUUgCguCUGUUGUAgUUaCGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 13621 0.67 0.95032
Target:  5'- aACAuCGCcGugGGCAcCGAgucagGCGGCCg -3'
miRNA:   3'- -UGUuGCGuCugUUGUaGUUa----CGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 32933 0.67 0.954968
Target:  5'- -gGGCGC-GACAAUcUCGGcgccgaccgucUGCGGCCa -3'
miRNA:   3'- ugUUGCGuCUGUUGuAGUU-----------ACGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 3514 0.67 0.954968
Target:  5'- -gGGCGC--GCGGCGUC--UGUGACCa -3'
miRNA:   3'- ugUUGCGucUGUUGUAGuuACGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 2154 0.67 0.933926
Target:  5'- -gGGCGCgcuacauGGACGACAUCGuggugcuggGCGACg -3'
miRNA:   3'- ugUUGCG-------UCUGUUGUAGUua-------CGCUGg -5'
26644 3' -47.7 NC_005808.1 + 32710 0.67 0.934503
Target:  5'- cGCGGCGCcgaacuucgacaGGACAGCAccgCGGcgucGCGGCCc -3'
miRNA:   3'- -UGUUGCG------------UCUGUUGUa--GUUa---CGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 8576 0.67 0.95032
Target:  5'- gGCGuCGUAGGCcGCGc--GUGCGGCCu -3'
miRNA:   3'- -UGUuGCGUCUGuUGUaguUACGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 19240 0.67 0.933926
Target:  5'- cGCGGCGuCAGGCccaugaacuucucGGCGUCGAUGCuggaaucGCCg -3'
miRNA:   3'- -UGUUGC-GUCUG-------------UUGUAGUUACGc------UGG- -5'
26644 3' -47.7 NC_005808.1 + 7831 0.67 0.95032
Target:  5'- cCGGCGCAGAUcGCGcCGGUGCuGCa -3'
miRNA:   3'- uGUUGCGUCUGuUGUaGUUACGcUGg -5'
26644 3' -47.7 NC_005808.1 + 28235 0.68 0.928595
Target:  5'- -gGGCGUGGGCAACggcgugGUCGAUcUGACCa -3'
miRNA:   3'- ugUUGCGUCUGUUG------UAGUUAcGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 37327 0.68 0.928595
Target:  5'- -uGGCGCAGcAUGGCAUCGcgcUGCGugGCCg -3'
miRNA:   3'- ugUUGCGUC-UGUUGUAGUu--ACGC--UGG- -5'
26644 3' -47.7 NC_005808.1 + 27524 0.68 0.928595
Target:  5'- cGCGGCGCGcuGGCAuaccaGCGcCAGggccUGCGGCCg -3'
miRNA:   3'- -UGUUGCGU--CUGU-----UGUaGUU----ACGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 39866 0.68 0.915819
Target:  5'- aGCAGCGcCGGGCcGCGcUCAA-GCGuCCg -3'
miRNA:   3'- -UGUUGC-GUCUGuUGU-AGUUaCGCuGG- -5'
26644 3' -47.7 NC_005808.1 + 12622 0.68 0.908953
Target:  5'- cCGACGCGcuCGGCAUCGcUGCuGCCg -3'
miRNA:   3'- uGUUGCGUcuGUUGUAGUuACGcUGG- -5'
26644 3' -47.7 NC_005808.1 + 39048 0.68 0.908953
Target:  5'- uGCGGCGCGGuuGGCGggacugCGcgguGUGCGGCUg -3'
miRNA:   3'- -UGUUGCGUCugUUGUa-----GU----UACGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 621 0.68 0.915819
Target:  5'- aGCAGCGCcguGGACAcggcguccgGCGUCGAgucgGUGcCCa -3'
miRNA:   3'- -UGUUGCG---UCUGU---------UGUAGUUa---CGCuGG- -5'
26644 3' -47.7 NC_005808.1 + 4331 0.68 0.915819
Target:  5'- cACGAUGguGcCAGCcUUGAUGCuGGCCg -3'
miRNA:   3'- -UGUUGCguCuGUUGuAGUUACG-CUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.