miRNA display CGI


Results 41 - 60 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26644 3' -47.7 NC_005808.1 + 29969 0.75 0.574847
Target:  5'- cGCGGCGCAcGACGGCcUgGAUGCaGCCg -3'
miRNA:   3'- -UGUUGCGU-CUGUUGuAgUUACGcUGG- -5'
26644 3' -47.7 NC_005808.1 + 4240 0.75 0.574847
Target:  5'- -aGACGUAGAUGGCguaGUCGGUGcCGGCCg -3'
miRNA:   3'- ugUUGCGUCUGUUG---UAGUUAC-GCUGG- -5'
26644 3' -47.7 NC_005808.1 + 13020 0.77 0.439733
Target:  5'- cGCAGCGCAGugGCGACGgccucgUCAucgcguugcuugaGUGCGGCCg -3'
miRNA:   3'- -UGUUGCGUC--UGUUGU------AGU-------------UACGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 21454 0.71 0.813944
Target:  5'- uGCGGCGgGGGCGGCAg-GAUGuUGGCCu -3'
miRNA:   3'- -UGUUGCgUCUGUUGUagUUAC-GCUGG- -5'
26644 3' -47.7 NC_005808.1 + 3744 0.7 0.823905
Target:  5'- -gGugGUGGGC-ACGUCGGUGCcGCCg -3'
miRNA:   3'- ugUugCGUCUGuUGUAGUUACGcUGG- -5'
26644 3' -47.7 NC_005808.1 + 39048 0.68 0.908953
Target:  5'- uGCGGCGCGGuuGGCGggacugCGcgguGUGCGGCUg -3'
miRNA:   3'- -UGUUGCGUCugUUGUa-----GU----UACGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 12622 0.68 0.908953
Target:  5'- cCGACGCGcuCGGCAUCGcUGCuGCCg -3'
miRNA:   3'- uGUUGCGUcuGUUGUAGUuACGcUGG- -5'
26644 3' -47.7 NC_005808.1 + 37244 0.69 0.894278
Target:  5'- cGCggUGCAGGCGGCcacgCAGcGCGAUg -3'
miRNA:   3'- -UGuuGCGUCUGUUGua--GUUaCGCUGg -5'
26644 3' -47.7 NC_005808.1 + 19046 0.69 0.886477
Target:  5'- aGCGGcCGCcGGCGGCGUCGAUcaGCGugUc -3'
miRNA:   3'- -UGUU-GCGuCUGUUGUAGUUA--CGCugG- -5'
26644 3' -47.7 NC_005808.1 + 35345 0.69 0.878375
Target:  5'- cACAAgGCcGGCGACAUCGGcccGCG-CCa -3'
miRNA:   3'- -UGUUgCGuCUGUUGUAGUUa--CGCuGG- -5'
26644 3' -47.7 NC_005808.1 + 13390 0.69 0.878375
Target:  5'- cCAGCGCgcgguuguAGGCGGCAUCGuUGCGGu- -3'
miRNA:   3'- uGUUGCG--------UCUGUUGUAGUuACGCUgg -5'
26644 3' -47.7 NC_005808.1 + 2375 0.69 0.878375
Target:  5'- cACGugGCAGACGcCcgC-GUGCGuACCc -3'
miRNA:   3'- -UGUugCGUCUGUuGuaGuUACGC-UGG- -5'
26644 3' -47.7 NC_005808.1 + 9513 0.69 0.878375
Target:  5'- cCGugGCGaACAgugGCAUCAugcUGCGGCCc -3'
miRNA:   3'- uGUugCGUcUGU---UGUAGUu--ACGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 4452 0.69 0.86998
Target:  5'- cCAGCGguGGCAcCGUC-AUGCacaacGACCg -3'
miRNA:   3'- uGUUGCguCUGUuGUAGuUACG-----CUGG- -5'
26644 3' -47.7 NC_005808.1 + 24557 0.7 0.85234
Target:  5'- cGCAGCGCGG-CGAUggCGAgGcCGGCCa -3'
miRNA:   3'- -UGUUGCGUCuGUUGuaGUUaC-GCUGG- -5'
26644 3' -47.7 NC_005808.1 + 16251 0.7 0.843115
Target:  5'- gAUAugGCGGAUGGCGUUGGccucgcgcGCGGCCa -3'
miRNA:   3'- -UGUugCGUCUGUUGUAGUUa-------CGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 35890 0.7 0.833632
Target:  5'- aGCAgauGCGCgcccaGGACAaggugugccuGCA-CGAUGCGACCu -3'
miRNA:   3'- -UGU---UGCG-----UCUGU----------UGUaGUUACGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 22295 0.7 0.832671
Target:  5'- cACGGCGUcgaagucGGGCAGCA-CGAUGCugcuGGCCg -3'
miRNA:   3'- -UGUUGCG-------UCUGUUGUaGUUACG----CUGG- -5'
26644 3' -47.7 NC_005808.1 + 6047 0.66 0.973797
Target:  5'- aGCGACGCAGACggUGUgGAauccaccuUGACCc -3'
miRNA:   3'- -UGUUGCGUCUGuuGUAgUUac------GCUGG- -5'
26644 3' -47.7 NC_005808.1 + 5130 0.83 0.228857
Target:  5'- gGCAAUGCcGACAACAUCAAUGCaGCg -3'
miRNA:   3'- -UGUUGCGuCUGUUGUAGUUACGcUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.