miRNA display CGI


Results 21 - 40 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26644 3' -47.7 NC_005808.1 + 23097 0.66 0.967116
Target:  5'- cCGACGCcaacGGCGGCGccCAcgGCGACa -3'
miRNA:   3'- uGUUGCGu---CUGUUGUa-GUuaCGCUGg -5'
26644 3' -47.7 NC_005808.1 + 29284 0.66 0.967116
Target:  5'- gACGugGUAGGCGACGaac-UGCuGGCCc -3'
miRNA:   3'- -UGUugCGUCUGUUGUaguuACG-CUGG- -5'
26644 3' -47.7 NC_005808.1 + 4213 0.66 0.967116
Target:  5'- cGCAAgGUGGGCGGCuUCcacuAUGCG-CCg -3'
miRNA:   3'- -UGUUgCGUCUGUUGuAGu---UACGCuGG- -5'
26644 3' -47.7 NC_005808.1 + 9256 0.66 0.963359
Target:  5'- cGCcgaGCAGGcCAACGUCGAcgGCG-CCa -3'
miRNA:   3'- -UGuugCGUCU-GUUGUAGUUa-CGCuGG- -5'
26644 3' -47.7 NC_005808.1 + 8118 0.66 0.963359
Target:  5'- uGCAccGCGCGGcCGGCGUUggUuguggGCGugCg -3'
miRNA:   3'- -UGU--UGCGUCuGUUGUAGuuA-----CGCugG- -5'
26644 3' -47.7 NC_005808.1 + 27596 0.66 0.960966
Target:  5'- gGCGGCGcCAGAUGGCGUggucgucgcccuugaCGAUG-GGCCg -3'
miRNA:   3'- -UGUUGC-GUCUGUUGUA---------------GUUACgCUGG- -5'
26644 3' -47.7 NC_005808.1 + 11917 0.66 0.959312
Target:  5'- -uGGCGCGGGguucgcccaggcCAACcgCGGcGCGGCCg -3'
miRNA:   3'- ugUUGCGUCU------------GUUGuaGUUaCGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 19243 0.66 0.959312
Target:  5'- uCGACGCcGGCGGCA-CGGgcaGCGACa -3'
miRNA:   3'- uGUUGCGuCUGUUGUaGUUa--CGCUGg -5'
26644 3' -47.7 NC_005808.1 + 35284 0.66 0.959312
Target:  5'- cCAGCgGCGGGCAc---CGcgGCGACCu -3'
miRNA:   3'- uGUUG-CGUCUGUuguaGUuaCGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 23193 0.66 0.959312
Target:  5'- gACAGCaGCAGGuCGGCcucGUCGGUGaauuCGGCCu -3'
miRNA:   3'- -UGUUG-CGUCU-GUUG---UAGUUAC----GCUGG- -5'
26644 3' -47.7 NC_005808.1 + 20607 0.66 0.958891
Target:  5'- cCuuCGcCAGGCGGCGUCGcaggucgGUGuCGGCCu -3'
miRNA:   3'- uGuuGC-GUCUGUUGUAGU-------UAC-GCUGG- -5'
26644 3' -47.7 NC_005808.1 + 36087 0.67 0.956741
Target:  5'- -gGGCGCAgGACAacaacuacggcaagcGCGUgAAUGCgGGCCu -3'
miRNA:   3'- ugUUGCGU-CUGU---------------UGUAgUUACG-CUGG- -5'
26644 3' -47.7 NC_005808.1 + 28815 0.67 0.954968
Target:  5'- aGCAGC-CAGcGCGcCGUCGucggguUGCGGCCg -3'
miRNA:   3'- -UGUUGcGUC-UGUuGUAGUu-----ACGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 3514 0.67 0.954968
Target:  5'- -gGGCGC--GCGGCGUC--UGUGACCa -3'
miRNA:   3'- ugUUGCGucUGUUGUAGuuACGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 37644 0.67 0.954968
Target:  5'- aGCAGCGCGauacgcGGCuGCAUCGugGCGcCCg -3'
miRNA:   3'- -UGUUGCGU------CUGuUGUAGUuaCGCuGG- -5'
26644 3' -47.7 NC_005808.1 + 32933 0.67 0.954968
Target:  5'- -gGGCGC-GACAAUcUCGGcgccgaccgucUGCGGCCa -3'
miRNA:   3'- ugUUGCGuCUGUUGuAGUU-----------ACGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 4172 0.67 0.954517
Target:  5'- uGCAGCGCAGGCuggcggaAACAcCAcgGCgcaGAUCa -3'
miRNA:   3'- -UGUUGCGUCUG-------UUGUaGUuaCG---CUGG- -5'
26644 3' -47.7 NC_005808.1 + 13621 0.67 0.95032
Target:  5'- aACAuCGCcGugGGCAcCGAgucagGCGGCCg -3'
miRNA:   3'- -UGUuGCGuCugUUGUaGUUa----CGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 8576 0.67 0.95032
Target:  5'- gGCGuCGUAGGCcGCGc--GUGCGGCCu -3'
miRNA:   3'- -UGUuGCGUCUGuUGUaguUACGCUGG- -5'
26644 3' -47.7 NC_005808.1 + 23536 0.67 0.95032
Target:  5'- gGCGGCGCAcGCG--GUCGAUGgccuCGGCCg -3'
miRNA:   3'- -UGUUGCGUcUGUugUAGUUAC----GCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.