miRNA display CGI


Results 21 - 40 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26645 3' -50.7 NC_005808.1 + 20759 0.73 0.557967
Target:  5'- aGGCGcuGCGCCGCGcucGAC-UCAucGCGCGGc -3'
miRNA:   3'- gCUGU--UGCGGCGC---UUGuAGU--UGUGCC- -5'
26645 3' -50.7 NC_005808.1 + 17911 0.72 0.569163
Target:  5'- gCGACGAgGCCacggugGCGGGCAUCAACcCGc -3'
miRNA:   3'- -GCUGUUgCGG------CGCUUGUAGUUGuGCc -5'
26645 3' -50.7 NC_005808.1 + 7260 0.72 0.590577
Target:  5'- gGACAucGCGCUGUcccggcugcgucaGGGCGUCAGCGCGu -3'
miRNA:   3'- gCUGU--UGCGGCG-------------CUUGUAGUUGUGCc -5'
26645 3' -50.7 NC_005808.1 + 27878 0.72 0.591709
Target:  5'- gGGCAGCGCgCGCGAggacgugcuGCGgcuGCGCGGc -3'
miRNA:   3'- gCUGUUGCG-GCGCU---------UGUaguUGUGCC- -5'
26645 3' -50.7 NC_005808.1 + 32614 0.72 0.598504
Target:  5'- gCGGCAuCGCCgGCGGcagcauccuggccgGCAUCAccagccuGCACGGg -3'
miRNA:   3'- -GCUGUuGCGG-CGCU--------------UGUAGU-------UGUGCC- -5'
26645 3' -50.7 NC_005808.1 + 27502 0.72 0.603041
Target:  5'- cCGGCGGCcucgGCCGCcAGCuucUCGGCGCGGu -3'
miRNA:   3'- -GCUGUUG----CGGCGcUUGu--AGUUGUGCC- -5'
26645 3' -50.7 NC_005808.1 + 22850 0.72 0.613263
Target:  5'- cCGACAgcgcGCGCUGCGAAUugggcugcuucugGUUcGCGCGGu -3'
miRNA:   3'- -GCUGU----UGCGGCGCUUG-------------UAGuUGUGCC- -5'
26645 3' -50.7 NC_005808.1 + 13255 0.72 0.6144
Target:  5'- gCGuACAACGCCGgccaaGGGCGccCAGCGCGGc -3'
miRNA:   3'- -GC-UGUUGCGGCg----CUUGUa-GUUGUGCC- -5'
26645 3' -50.7 NC_005808.1 + 39778 0.71 0.622361
Target:  5'- -cGCGugGCCGCGAGCAccuggcccgacgaaUCGACGaagUGGg -3'
miRNA:   3'- gcUGUugCGGCGCUUGU--------------AGUUGU---GCC- -5'
26645 3' -50.7 NC_005808.1 + 5221 0.71 0.637157
Target:  5'- aGGCAAUGCgGCaAACAUCAACGuCGu -3'
miRNA:   3'- gCUGUUGCGgCGcUUGUAGUUGU-GCc -5'
26645 3' -50.7 NC_005808.1 + 1047 0.71 0.648533
Target:  5'- gCGGCAGCaugucGCCGCGAaccgGCGUCcaguaacgcGCGCGGu -3'
miRNA:   3'- -GCUGUUG-----CGGCGCU----UGUAGu--------UGUGCC- -5'
26645 3' -50.7 NC_005808.1 + 25776 0.71 0.648533
Target:  5'- gCGGCAACgaugGCCGCGAugcGCG-CGGCGCGc -3'
miRNA:   3'- -GCUGUUG----CGGCGCU---UGUaGUUGUGCc -5'
26645 3' -50.7 NC_005808.1 + 3544 0.71 0.671226
Target:  5'- uGcCAGCuGCCGcCGAACAgcgCAGCAgCGGg -3'
miRNA:   3'- gCuGUUG-CGGC-GCUUGUa--GUUGU-GCC- -5'
26645 3' -50.7 NC_005808.1 + 39471 0.71 0.671227
Target:  5'- -uGCAcACGCaCGCGGGCAuuuUCAACACGc -3'
miRNA:   3'- gcUGU-UGCG-GCGCUUGU---AGUUGUGCc -5'
26645 3' -50.7 NC_005808.1 + 28462 0.71 0.68252
Target:  5'- uGGCGccGCGCCGCcGGCGUCgAACugGa -3'
miRNA:   3'- gCUGU--UGCGGCGcUUGUAG-UUGugCc -5'
26645 3' -50.7 NC_005808.1 + 37138 0.71 0.68252
Target:  5'- aCGACcGCGgCGUGAugGUCGAUACc- -3'
miRNA:   3'- -GCUGuUGCgGCGCUugUAGUUGUGcc -5'
26645 3' -50.7 NC_005808.1 + 2450 0.71 0.68252
Target:  5'- uGACAaggguACGCaCGCGGGCGUCugcCACGu -3'
miRNA:   3'- gCUGU-----UGCG-GCGCUUGUAGuu-GUGCc -5'
26645 3' -50.7 NC_005808.1 + 5192 0.71 0.68252
Target:  5'- cCGACAACGCa--GAcaACAUCAAUGCGa -3'
miRNA:   3'- -GCUGUUGCGgcgCU--UGUAGUUGUGCc -5'
26645 3' -50.7 NC_005808.1 + 13758 0.71 0.68252
Target:  5'- gGGCAgauggACGCCGaCG-ACAUCcuCACGGu -3'
miRNA:   3'- gCUGU-----UGCGGC-GCuUGUAGuuGUGCC- -5'
26645 3' -50.7 NC_005808.1 + 18520 0.71 0.68252
Target:  5'- cCGcCGGCGCCGCGAcCGUCAcguuuuCGGu -3'
miRNA:   3'- -GCuGUUGCGGCGCUuGUAGUugu---GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.