miRNA display CGI


Results 21 - 40 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26645 3' -50.7 NC_005808.1 + 5192 0.71 0.68252
Target:  5'- cCGACAACGCa--GAcaACAUCAAUGCGa -3'
miRNA:   3'- -GCUGUUGCGgcgCU--UGUAGUUGUGCc -5'
26645 3' -50.7 NC_005808.1 + 5221 0.71 0.637157
Target:  5'- aGGCAAUGCgGCaAACAUCAACGuCGu -3'
miRNA:   3'- gCUGUUGCGgCGcUUGUAGUUGU-GCc -5'
26645 3' -50.7 NC_005808.1 + 5342 1.11 0.001896
Target:  5'- cCGACAACGCCGCGAACAUCAACACGGu -3'
miRNA:   3'- -GCUGUUGCGGCGCUUGUAGUUGUGCC- -5'
26645 3' -50.7 NC_005808.1 + 5453 0.66 0.896296
Target:  5'- uCGGCGACGUgaGCac-CGUCAGCACGc -3'
miRNA:   3'- -GCUGUUGCGg-CGcuuGUAGUUGUGCc -5'
26645 3' -50.7 NC_005808.1 + 5627 0.66 0.896296
Target:  5'- gCGuuGGCGCCGUcGAUAcCGugGCGGg -3'
miRNA:   3'- -GCugUUGCGGCGcUUGUaGUugUGCC- -5'
26645 3' -50.7 NC_005808.1 + 5675 0.81 0.201789
Target:  5'- --uCGACGCCguggcuaccaacgagGCGGACAUCGACACGGu -3'
miRNA:   3'- gcuGUUGCGG---------------CGCUUGUAGUUGUGCC- -5'
26645 3' -50.7 NC_005808.1 + 6473 0.66 0.903424
Target:  5'- aCGACAugGgCCGCGAcuACAccgggcCGGC-CGGc -3'
miRNA:   3'- -GCUGUugC-GGCGCU--UGUa-----GUUGuGCC- -5'
26645 3' -50.7 NC_005808.1 + 6728 0.67 0.873224
Target:  5'- uCGGCGugG-CGCaGAcCAUgAGCGCGGa -3'
miRNA:   3'- -GCUGUugCgGCG-CUuGUAgUUGUGCC- -5'
26645 3' -50.7 NC_005808.1 + 7153 0.66 0.910263
Target:  5'- gCGugGgcGCGCCGUGggUAggc-CGCGGc -3'
miRNA:   3'- -GCugU--UGCGGCGCuuGUaguuGUGCC- -5'
26645 3' -50.7 NC_005808.1 + 7219 0.66 0.903424
Target:  5'- aCGGCAgcaucuGCGCCGCGcuCAcccUCGGCGauguCGGc -3'
miRNA:   3'- -GCUGU------UGCGGCGCuuGU---AGUUGU----GCC- -5'
26645 3' -50.7 NC_005808.1 + 7260 0.72 0.590577
Target:  5'- gGACAucGCGCUGUcccggcugcgucaGGGCGUCAGCGCGu -3'
miRNA:   3'- gCUGU--UGCGGCG-------------CUUGUAGUUGUGCc -5'
26645 3' -50.7 NC_005808.1 + 7300 0.66 0.910263
Target:  5'- cCGACAuCGCCgaggGUGAGCG-CGGCGCa- -3'
miRNA:   3'- -GCUGUuGCGG----CGCUUGUaGUUGUGcc -5'
26645 3' -50.7 NC_005808.1 + 7307 0.69 0.748768
Target:  5'- gGAUGGCGCCGuCGAugGUCugcgAACGCa- -3'
miRNA:   3'- gCUGUUGCGGC-GCUugUAG----UUGUGcc -5'
26645 3' -50.7 NC_005808.1 + 7363 0.7 0.727057
Target:  5'- uCGACGGCGCCauccGCGAGCAc---UACGGc -3'
miRNA:   3'- -GCUGUUGCGG----CGCUUGUaguuGUGCC- -5'
26645 3' -50.7 NC_005808.1 + 7612 0.68 0.810461
Target:  5'- aCGACccgGCCGCGAGC--CAGCguGCGGa -3'
miRNA:   3'- -GCUGuugCGGCGCUUGuaGUUG--UGCC- -5'
26645 3' -50.7 NC_005808.1 + 8127 0.68 0.829552
Target:  5'- aGGCAGCGaCCuggGCGcGCGUCAugGaCGGc -3'
miRNA:   3'- gCUGUUGC-GG---CGCuUGUAGUugU-GCC- -5'
26645 3' -50.7 NC_005808.1 + 8585 0.7 0.727057
Target:  5'- gGGCAAguuCGCCgGCGAcaucaaggGCAUCGACGUGGa -3'
miRNA:   3'- gCUGUU---GCGG-CGCU--------UGUAGUUGUGCC- -5'
26645 3' -50.7 NC_005808.1 + 8845 0.66 0.91681
Target:  5'- cCGACccaucguGCGCCGCGuGCugcccgaagCGGCACGu -3'
miRNA:   3'- -GCUGu------UGCGGCGCuUGua-------GUUGUGCc -5'
26645 3' -50.7 NC_005808.1 + 9209 0.7 0.693762
Target:  5'- uCGGCGGCGCgGCGcACGUucugCGGCGCGc -3'
miRNA:   3'- -GCUGUUGCGgCGCuUGUA----GUUGUGCc -5'
26645 3' -50.7 NC_005808.1 + 9283 0.66 0.91681
Target:  5'- gGGC-GCGCCGCaGAACGUgCGcCGCGc -3'
miRNA:   3'- gCUGuUGCGGCG-CUUGUA-GUuGUGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.