miRNA display CGI


Results 1 - 20 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26645 3' -50.7 NC_005808.1 + 388 0.69 0.780353
Target:  5'- aGACGAUGCCcaggGCGccCAccagCAGCACGGc -3'
miRNA:   3'- gCUGUUGCGG----CGCuuGUa---GUUGUGCC- -5'
26645 3' -50.7 NC_005808.1 + 621 0.75 0.45071
Target:  5'- -aGCAGCGCCGUGGACA-CGGCGucCGGc -3'
miRNA:   3'- gcUGUUGCGGCGCUUGUaGUUGU--GCC- -5'
26645 3' -50.7 NC_005808.1 + 804 0.69 0.777255
Target:  5'- cCGGCGacGCGCCGCgcccagcccuugccGAACGUCGGCcaggUGGg -3'
miRNA:   3'- -GCUGU--UGCGGCG--------------CUUGUAGUUGu---GCC- -5'
26645 3' -50.7 NC_005808.1 + 996 0.67 0.846867
Target:  5'- uGGCggUGCCGUGGuucaccgcaGCGUCGAacaccuggaaggcCACGGc -3'
miRNA:   3'- gCUGuuGCGGCGCU---------UGUAGUU-------------GUGCC- -5'
26645 3' -50.7 NC_005808.1 + 1047 0.71 0.648533
Target:  5'- gCGGCAGCaugucGCCGCGAaccgGCGUCcaguaacgcGCGCGGu -3'
miRNA:   3'- -GCUGUUG-----CGGCGCU----UGUAGu--------UGUGCC- -5'
26645 3' -50.7 NC_005808.1 + 1166 0.68 0.838769
Target:  5'- gCGAC-AUGCCGCG-----CGACACGGc -3'
miRNA:   3'- -GCUGuUGCGGCGCuuguaGUUGUGCC- -5'
26645 3' -50.7 NC_005808.1 + 2346 0.67 0.859926
Target:  5'- uCGACcGCGCggcacuguaCGCGAugAUCGacaagaagauucauuGCGCGGc -3'
miRNA:   3'- -GCUGuUGCG---------GCGCUugUAGU---------------UGUGCC- -5'
26645 3' -50.7 NC_005808.1 + 2428 0.66 0.896296
Target:  5'- aCGGCAGCagGCCGgccuCGAAgAUCGGCGCc- -3'
miRNA:   3'- -GCUGUUG--CGGC----GCUUgUAGUUGUGcc -5'
26645 3' -50.7 NC_005808.1 + 2450 0.71 0.68252
Target:  5'- uGACAaggguACGCaCGCGGGCGUCugcCACGu -3'
miRNA:   3'- gCUGU-----UGCG-GCGCUUGUAGuu-GUGCc -5'
26645 3' -50.7 NC_005808.1 + 2980 0.67 0.856499
Target:  5'- uCGAacuCGaaCGCGAACAUCGgggcGCGCGGc -3'
miRNA:   3'- -GCUguuGCg-GCGCUUGUAGU----UGUGCC- -5'
26645 3' -50.7 NC_005808.1 + 3536 0.76 0.373599
Target:  5'- uCGAacuCGcCCGCGAACAUCGgggcGCGCGGc -3'
miRNA:   3'- -GCUguuGC-GGCGCUUGUAGU----UGUGCC- -5'
26645 3' -50.7 NC_005808.1 + 3544 0.71 0.671226
Target:  5'- uGcCAGCuGCCGcCGAACAgcgCAGCAgCGGg -3'
miRNA:   3'- gCuGUUG-CGGC-GCUUGUa--GUUGU-GCC- -5'
26645 3' -50.7 NC_005808.1 + 4000 0.67 0.847755
Target:  5'- -uACAACGUgaccauCGCGGACggCAGCGCGu -3'
miRNA:   3'- gcUGUUGCG------GCGCUUGuaGUUGUGCc -5'
26645 3' -50.7 NC_005808.1 + 4413 0.69 0.75944
Target:  5'- cCGGCAACGCaacgGCcAGCAUCAAgGCuGGc -3'
miRNA:   3'- -GCUGUUGCGg---CGcUUGUAGUUgUG-CC- -5'
26645 3' -50.7 NC_005808.1 + 4513 0.74 0.481804
Target:  5'- gGGCGGCGcCCGUGAACGUgGcguGCugGGc -3'
miRNA:   3'- gCUGUUGC-GGCGCUUGUAgU---UGugCC- -5'
26645 3' -50.7 NC_005808.1 + 4826 0.68 0.820112
Target:  5'- gGGCgAACGCCGaGAACAUC---GCGGc -3'
miRNA:   3'- gCUG-UUGCGGCgCUUGUAGuugUGCC- -5'
26645 3' -50.7 NC_005808.1 + 4926 0.69 0.769973
Target:  5'- uCGGCAGCGaugcCCGCGAcgGUCuGCACGu -3'
miRNA:   3'- -GCUGUUGC----GGCGCUugUAGuUGUGCc -5'
26645 3' -50.7 NC_005808.1 + 5049 0.68 0.829552
Target:  5'- gCGGUAGCGgCGaaCGAaggaaACGUCAACACGGu -3'
miRNA:   3'- -GCUGUUGCgGC--GCU-----UGUAGUUGUGCC- -5'
26645 3' -50.7 NC_005808.1 + 5132 0.75 0.450711
Target:  5'- uCGGCAAUGCCGacAACAUCAAUgcaGCGGu -3'
miRNA:   3'- -GCUGUUGCGGCgcUUGUAGUUG---UGCC- -5'
26645 3' -50.7 NC_005808.1 + 5168 0.66 0.903424
Target:  5'- nGACcGCuGCUaaccaaGCGAACAUCAAUgcaGCGGn -3'
miRNA:   3'- gCUGuUG-CGG------CGCUUGUAGUUG---UGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.