miRNA display CGI


Results 1 - 20 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26645 3' -50.7 NC_005808.1 + 21726 0.66 0.888883
Target:  5'- uCGugGACGUgCGCGAGCGcaCAAgGCGa -3'
miRNA:   3'- -GCugUUGCG-GCGCUUGUa-GUUgUGCc -5'
26645 3' -50.7 NC_005808.1 + 10957 0.66 0.909592
Target:  5'- gCGGCGACaGCCGgGGACAcugggccaccuguUCGGCcaggcCGGa -3'
miRNA:   3'- -GCUGUUG-CGGCgCUUGU-------------AGUUGu----GCC- -5'
26645 3' -50.7 NC_005808.1 + 7219 0.66 0.903424
Target:  5'- aCGGCAgcaucuGCGCCGCGcuCAcccUCGGCGauguCGGc -3'
miRNA:   3'- -GCUGU------UGCGGCGCuuGU---AGUUGU----GCC- -5'
26645 3' -50.7 NC_005808.1 + 34363 0.66 0.888883
Target:  5'- gCGACuuCGCCGaCGAG----GGCACGGc -3'
miRNA:   3'- -GCUGuuGCGGC-GCUUguagUUGUGCC- -5'
26645 3' -50.7 NC_005808.1 + 2428 0.66 0.896296
Target:  5'- aCGGCAGCagGCCGgccuCGAAgAUCGGCGCc- -3'
miRNA:   3'- -GCUGUUG--CGGC----GCUUgUAGUUGUGcc -5'
26645 3' -50.7 NC_005808.1 + 28591 0.66 0.914877
Target:  5'- cCGGCAGCGUgGUGucgGUCAguuccuugaaccggGCGCGGa -3'
miRNA:   3'- -GCUGUUGCGgCGCuugUAGU--------------UGUGCC- -5'
26645 3' -50.7 NC_005808.1 + 14873 0.66 0.896296
Target:  5'- aGGCAGCGCCGcCGAgguGCAgguuuccagCGACAUc- -3'
miRNA:   3'- gCUGUUGCGGC-GCU---UGUa--------GUUGUGcc -5'
26645 3' -50.7 NC_005808.1 + 32560 0.66 0.91681
Target:  5'- cCGGCGAUGCCGCuccGACGuaUCAGgACa- -3'
miRNA:   3'- -GCUGUUGCGGCGc--UUGU--AGUUgUGcc -5'
26645 3' -50.7 NC_005808.1 + 29550 0.66 0.91681
Target:  5'- gGACAcccACGCCGUGcucgggguaucGCGUCAGguCGGc -3'
miRNA:   3'- gCUGU---UGCGGCGCu----------UGUAGUUguGCC- -5'
26645 3' -50.7 NC_005808.1 + 35064 0.66 0.910263
Target:  5'- uCGAgcACGCCGcCGAGC----GCACGGu -3'
miRNA:   3'- -GCUguUGCGGC-GCUUGuaguUGUGCC- -5'
26645 3' -50.7 NC_005808.1 + 18391 0.66 0.888883
Target:  5'- cCGAUGGCGCCggugGCGGccACGUCGGCgaaGGu -3'
miRNA:   3'- -GCUGUUGCGG----CGCU--UGUAGUUGug-CC- -5'
26645 3' -50.7 NC_005808.1 + 13990 0.66 0.888883
Target:  5'- -cACGGCGCUGCGcGACAUCGcccugaACugGa -3'
miRNA:   3'- gcUGUUGCGGCGC-UUGUAGU------UGugCc -5'
26645 3' -50.7 NC_005808.1 + 22887 0.66 0.902724
Target:  5'- uCGGCAGCGCgGCGAAgucgggcCAgucCGGCACc- -3'
miRNA:   3'- -GCUGUUGCGgCGCUU-------GUa--GUUGUGcc -5'
26645 3' -50.7 NC_005808.1 + 5627 0.66 0.896296
Target:  5'- gCGuuGGCGCCGUcGAUAcCGugGCGGg -3'
miRNA:   3'- -GCugUUGCGGCGcUUGUaGUugUGCC- -5'
26645 3' -50.7 NC_005808.1 + 18465 0.66 0.888883
Target:  5'- -cGCGGCGCCgGCGG-CGUCGGC-CGa -3'
miRNA:   3'- gcUGUUGCGG-CGCUuGUAGUUGuGCc -5'
26645 3' -50.7 NC_005808.1 + 32590 0.66 0.888883
Target:  5'- cCGcCGACGCUGUGAccaagcuggcccGCGUCAAgggccgcgacgcCGCGGu -3'
miRNA:   3'- -GCuGUUGCGGCGCU------------UGUAGUU------------GUGCC- -5'
26645 3' -50.7 NC_005808.1 + 31433 0.66 0.888883
Target:  5'- aCGGCGACGCCaCGAucugCGGCGUGGu -3'
miRNA:   3'- -GCUGUUGCGGcGCUuguaGUUGUGCC- -5'
26645 3' -50.7 NC_005808.1 + 5453 0.66 0.896296
Target:  5'- uCGGCGACGUgaGCac-CGUCAGCACGc -3'
miRNA:   3'- -GCUGUUGCGg-CGcuuGUAGUUGUGCc -5'
26645 3' -50.7 NC_005808.1 + 8845 0.66 0.91681
Target:  5'- cCGACccaucguGCGCCGCGuGCugcccgaagCGGCACGu -3'
miRNA:   3'- -GCUGu------UGCGGCGCuUGua-------GUUGUGCc -5'
26645 3' -50.7 NC_005808.1 + 14645 0.66 0.896296
Target:  5'- gGAUcg-GCCGCcGGCAUCAGCcCGGu -3'
miRNA:   3'- gCUGuugCGGCGcUUGUAGUUGuGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.