miRNA display CGI


Results 1 - 20 of 152 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26645 3' -50.7 NC_005808.1 + 27780 0.76 0.370885
Target:  5'- gGACAcguacacgaagcgcGCGCCGCGcAGCcgCAGCACGu -3'
miRNA:   3'- gCUGU--------------UGCGGCGC-UUGuaGUUGUGCc -5'
26645 3' -50.7 NC_005808.1 + 41716 0.7 0.727057
Target:  5'- -aACAACGCgGCGGcccuCGUCGAUAgGGa -3'
miRNA:   3'- gcUGUUGCGgCGCUu---GUAGUUGUgCC- -5'
26645 3' -50.7 NC_005808.1 + 17197 0.7 0.727057
Target:  5'- uGAUuuCGCCGCcgccgaagGAGCGUUgcagGACGCGGa -3'
miRNA:   3'- gCUGuuGCGGCG--------CUUGUAG----UUGUGCC- -5'
26645 3' -50.7 NC_005808.1 + 28720 0.7 0.723763
Target:  5'- uGuCGGCGCaCGCGAggaugagcgccuugGCAUCGuccaGCGCGGu -3'
miRNA:   3'- gCuGUUGCG-GCGCU--------------UGUAGU----UGUGCC- -5'
26645 3' -50.7 NC_005808.1 + 9209 0.7 0.693762
Target:  5'- uCGGCGGCGCgGCGcACGUucugCGGCGCGc -3'
miRNA:   3'- -GCUGUUGCGgCGCuUGUA----GUUGUGCc -5'
26645 3' -50.7 NC_005808.1 + 37138 0.71 0.68252
Target:  5'- aCGACcGCGgCGUGAugGUCGAUACc- -3'
miRNA:   3'- -GCUGuUGCgGCGCUugUAGUUGUGcc -5'
26645 3' -50.7 NC_005808.1 + 3544 0.71 0.671226
Target:  5'- uGcCAGCuGCCGcCGAACAgcgCAGCAgCGGg -3'
miRNA:   3'- gCuGUUG-CGGC-GCUUGUa--GUUGU-GCC- -5'
26645 3' -50.7 NC_005808.1 + 25776 0.71 0.648533
Target:  5'- gCGGCAACgaugGCCGCGAugcGCG-CGGCGCGc -3'
miRNA:   3'- -GCUGUUG----CGGCGCU---UGUaGUUGUGCc -5'
26645 3' -50.7 NC_005808.1 + 1047 0.71 0.648533
Target:  5'- gCGGCAGCaugucGCCGCGAaccgGCGUCcaguaacgcGCGCGGu -3'
miRNA:   3'- -GCUGUUG-----CGGCGCU----UGUAGu--------UGUGCC- -5'
26645 3' -50.7 NC_005808.1 + 39778 0.71 0.622361
Target:  5'- -cGCGugGCCGCGAGCAccuggcccgacgaaUCGACGaagUGGg -3'
miRNA:   3'- gcUGUugCGGCGCUUGU--------------AGUUGU---GCC- -5'
26645 3' -50.7 NC_005808.1 + 22850 0.72 0.613263
Target:  5'- cCGACAgcgcGCGCUGCGAAUugggcugcuucugGUUcGCGCGGu -3'
miRNA:   3'- -GCUGU----UGCGGCGCUUG-------------UAGuUGUGCC- -5'
26645 3' -50.7 NC_005808.1 + 27502 0.72 0.603041
Target:  5'- cCGGCGGCcucgGCCGCcAGCuucUCGGCGCGGu -3'
miRNA:   3'- -GCUGUUG----CGGCGcUUGu--AGUUGUGCC- -5'
26645 3' -50.7 NC_005808.1 + 20759 0.73 0.557967
Target:  5'- aGGCGcuGCGCCGCGcucGAC-UCAucGCGCGGc -3'
miRNA:   3'- gCUGU--UGCGGCGC---UUGuAGU--UGUGCC- -5'
26645 3' -50.7 NC_005808.1 + 4513 0.74 0.481804
Target:  5'- gGGCGGCGcCCGUGAACGUgGcguGCugGGc -3'
miRNA:   3'- gCUGUUGC-GGCGCUUGUAgU---UGugCC- -5'
26645 3' -50.7 NC_005808.1 + 20867 0.75 0.45071
Target:  5'- aCGACGgcgcGCGCCGUGAuu-UCGAcCACGGa -3'
miRNA:   3'- -GCUGU----UGCGGCGCUuguAGUU-GUGCC- -5'
26645 3' -50.7 NC_005808.1 + 15209 0.75 0.45071
Target:  5'- cCGAUGGCGauuuCCGCcGACAUCGACACGa -3'
miRNA:   3'- -GCUGUUGC----GGCGcUUGUAGUUGUGCc -5'
26645 3' -50.7 NC_005808.1 + 621 0.75 0.45071
Target:  5'- -aGCAGCGCCGUGGACA-CGGCGucCGGc -3'
miRNA:   3'- gcUGUUGCGGCGCUUGUaGUUGU--GCC- -5'
26645 3' -50.7 NC_005808.1 + 22784 0.76 0.382738
Target:  5'- gGuCAACGCCcuGCGGGCcgGUCAGCAUGGu -3'
miRNA:   3'- gCuGUUGCGG--CGCUUG--UAGUUGUGCC- -5'
26645 3' -50.7 NC_005808.1 + 35472 0.76 0.373599
Target:  5'- cCGACGACuUCGCGGACGUgAGCGgGGa -3'
miRNA:   3'- -GCUGUUGcGGCGCUUGUAgUUGUgCC- -5'
26645 3' -50.7 NC_005808.1 + 9311 0.78 0.298178
Target:  5'- uCGGCGACcugGCgGCGcACGUCGGCGCGGc -3'
miRNA:   3'- -GCUGUUG---CGgCGCuUGUAGUUGUGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.