miRNA display CGI


Results 1 - 20 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26645 3' -50.7 NC_005808.1 + 5342 1.11 0.001896
Target:  5'- cCGACAACGCCGCGAACAUCAACACGGu -3'
miRNA:   3'- -GCUGUUGCGGCGCUUGUAGUUGUGCC- -5'
26645 3' -50.7 NC_005808.1 + 5221 0.71 0.637157
Target:  5'- aGGCAAUGCgGCaAACAUCAACGuCGu -3'
miRNA:   3'- gCUGUUGCGgCGcUUGUAGUUGU-GCc -5'
26645 3' -50.7 NC_005808.1 + 28462 0.71 0.68252
Target:  5'- uGGCGccGCGCCGCcGGCGUCgAACugGa -3'
miRNA:   3'- gCUGU--UGCGGCGcUUGUAG-UUGugCc -5'
26645 3' -50.7 NC_005808.1 + 8845 0.66 0.91681
Target:  5'- cCGACccaucguGCGCCGCGuGCugcccgaagCGGCACGu -3'
miRNA:   3'- -GCUGu------UGCGGCGCuUGua-------GUUGUGCc -5'
26645 3' -50.7 NC_005808.1 + 36861 0.77 0.330164
Target:  5'- gCGGCAGCGCCaGCGGAUAgUCgGGCAUGGc -3'
miRNA:   3'- -GCUGUUGCGG-CGCUUGU-AG-UUGUGCC- -5'
26645 3' -50.7 NC_005808.1 + 3536 0.76 0.373599
Target:  5'- uCGAacuCGcCCGCGAACAUCGgggcGCGCGGc -3'
miRNA:   3'- -GCUguuGC-GGCGCUUGUAGU----UGUGCC- -5'
26645 3' -50.7 NC_005808.1 + 22479 0.74 0.471321
Target:  5'- aGGCGugGCUgGCGAACGUCA-CGCGc -3'
miRNA:   3'- gCUGUugCGG-CGCUUGUAGUuGUGCc -5'
26645 3' -50.7 NC_005808.1 + 32690 0.74 0.492399
Target:  5'- gGACAGCaCCGCG-GCGUCGcggcccuugACGCGGg -3'
miRNA:   3'- gCUGUUGcGGCGCuUGUAGU---------UGUGCC- -5'
26645 3' -50.7 NC_005808.1 + 37348 0.73 0.546836
Target:  5'- aGGCcguAgGCCGCGAGCAcguggcgCAGCAUGGc -3'
miRNA:   3'- gCUGu--UgCGGCGCUUGUa------GUUGUGCC- -5'
26645 3' -50.7 NC_005808.1 + 13255 0.72 0.6144
Target:  5'- gCGuACAACGCCGgccaaGGGCGccCAGCGCGGc -3'
miRNA:   3'- -GC-UGUUGCGGCg----CUUGUa-GUUGUGCC- -5'
26645 3' -50.7 NC_005808.1 + 7260 0.72 0.590577
Target:  5'- gGACAucGCGCUGUcccggcugcgucaGGGCGUCAGCGCGu -3'
miRNA:   3'- gCUGU--UGCGGCG-------------CUUGUAGUUGUGCc -5'
26645 3' -50.7 NC_005808.1 + 23163 0.73 0.513901
Target:  5'- cCGugGGCGCCGCcguuGGCGUCGGgGCGa -3'
miRNA:   3'- -GCugUUGCGGCGc---UUGUAGUUgUGCc -5'
26645 3' -50.7 NC_005808.1 + 34235 0.81 0.18881
Target:  5'- gCGGgGGCGUCGCgGAACAUCGGCGCGa -3'
miRNA:   3'- -GCUgUUGCGGCG-CUUGUAGUUGUGCc -5'
26645 3' -50.7 NC_005808.1 + 27878 0.72 0.591709
Target:  5'- gGGCAGCGCgCGCGAggacgugcuGCGgcuGCGCGGc -3'
miRNA:   3'- gCUGUUGCG-GCGCU---------UGUaguUGUGCC- -5'
26645 3' -50.7 NC_005808.1 + 5675 0.81 0.201789
Target:  5'- --uCGACGCCguggcuaccaacgagGCGGACAUCGACACGGu -3'
miRNA:   3'- gcuGUUGCGG---------------CGCUUGUAGUUGUGCC- -5'
26645 3' -50.7 NC_005808.1 + 33926 0.74 0.492399
Target:  5'- cCGGCgGGCGCgGCGcuacCGUCAACAUGGa -3'
miRNA:   3'- -GCUG-UUGCGgCGCuu--GUAGUUGUGCC- -5'
26645 3' -50.7 NC_005808.1 + 32614 0.72 0.598504
Target:  5'- gCGGCAuCGCCgGCGGcagcauccuggccgGCAUCAccagccuGCACGGg -3'
miRNA:   3'- -GCUGUuGCGG-CGCU--------------UGUAGU-------UGUGCC- -5'
26645 3' -50.7 NC_005808.1 + 39471 0.71 0.671227
Target:  5'- -uGCAcACGCaCGCGGGCAuuuUCAACACGc -3'
miRNA:   3'- gcUGU-UGCG-GCGCUUGU---AGUUGUGCc -5'
26645 3' -50.7 NC_005808.1 + 17471 0.79 0.275802
Target:  5'- aCGugGGCGCCGCuGAaucgaagcgguGCGUCGGCGCGa -3'
miRNA:   3'- -GCugUUGCGGCG-CU-----------UGUAGUUGUGCc -5'
26645 3' -50.7 NC_005808.1 + 5132 0.75 0.450711
Target:  5'- uCGGCAAUGCCGacAACAUCAAUgcaGCGGu -3'
miRNA:   3'- -GCUGUUGCGGCgcUUGUAGUUG---UGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.