miRNA display CGI


Results 1 - 20 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26645 3' -50.7 NC_005808.1 + 41716 0.7 0.727057
Target:  5'- -aACAACGCgGCGGcccuCGUCGAUAgGGa -3'
miRNA:   3'- gcUGUUGCGgCGCUu---GUAGUUGUgCC- -5'
26645 3' -50.7 NC_005808.1 + 41291 0.67 0.873224
Target:  5'- uGACAuaggGCGCCGCGGccACGcgCAcaACGGu -3'
miRNA:   3'- gCUGU----UGCGGCGCU--UGUa-GUugUGCC- -5'
26645 3' -50.7 NC_005808.1 + 39778 0.71 0.622361
Target:  5'- -cGCGugGCCGCGAGCAccuggcccgacgaaUCGACGaagUGGg -3'
miRNA:   3'- gcUGUugCGGCGCUUGU--------------AGUUGU---GCC- -5'
26645 3' -50.7 NC_005808.1 + 39471 0.71 0.671227
Target:  5'- -uGCAcACGCaCGCGGGCAuuuUCAACACGc -3'
miRNA:   3'- gcUGU-UGCG-GCGCUUGU---AGUUGUGCc -5'
26645 3' -50.7 NC_005808.1 + 38558 0.67 0.847755
Target:  5'- gGGCGGCGCugaauucguCGCGGuCGUCGGCuuCGGu -3'
miRNA:   3'- gCUGUUGCG---------GCGCUuGUAGUUGu-GCC- -5'
26645 3' -50.7 NC_005808.1 + 38467 0.7 0.693763
Target:  5'- gGGCAuguugGCCGCGAGCA-CGuCGCGGc -3'
miRNA:   3'- gCUGUug---CGGCGCUUGUaGUuGUGCC- -5'
26645 3' -50.7 NC_005808.1 + 38103 0.67 0.864991
Target:  5'- uGugG-CGCCGCGcGCAUCcg-GCGGu -3'
miRNA:   3'- gCugUuGCGGCGCuUGUAGuugUGCC- -5'
26645 3' -50.7 NC_005808.1 + 37644 0.67 0.847755
Target:  5'- -aGCAGCGCgauaCGCGGcuGCAUCGugGCGc -3'
miRNA:   3'- gcUGUUGCG----GCGCU--UGUAGUugUGCc -5'
26645 3' -50.7 NC_005808.1 + 37348 0.73 0.546836
Target:  5'- aGGCcguAgGCCGCGAGCAcguggcgCAGCAUGGc -3'
miRNA:   3'- gCUGu--UgCGGCGCUUGUa------GUUGUGCC- -5'
26645 3' -50.7 NC_005808.1 + 37266 0.69 0.745542
Target:  5'- -uGC-GCGCCGCGAGCAccuUCugcguacgcuccacGGCGCGGa -3'
miRNA:   3'- gcUGuUGCGGCGCUUGU---AG--------------UUGUGCC- -5'
26645 3' -50.7 NC_005808.1 + 37138 0.71 0.68252
Target:  5'- aCGACcGCGgCGUGAugGUCGAUACc- -3'
miRNA:   3'- -GCUGuUGCgGCGCUugUAGUUGUGcc -5'
26645 3' -50.7 NC_005808.1 + 36861 0.77 0.330164
Target:  5'- gCGGCAGCGCCaGCGGAUAgUCgGGCAUGGc -3'
miRNA:   3'- -GCUGUUGCGG-CGCUUGU-AG-UUGUGCC- -5'
26645 3' -50.7 NC_005808.1 + 36809 0.68 0.838769
Target:  5'- uGGCGcUGCCGCGAugGCGg-GACACGa -3'
miRNA:   3'- gCUGUuGCGGCGCU--UGUagUUGUGCc -5'
26645 3' -50.7 NC_005808.1 + 36747 0.69 0.780353
Target:  5'- cCGGCAucuuuuCGCCGCuGGcgGCAUCccagacguACACGGg -3'
miRNA:   3'- -GCUGUu-----GCGGCG-CU--UGUAGu-------UGUGCC- -5'
26645 3' -50.7 NC_005808.1 + 36512 0.68 0.829551
Target:  5'- -cGCAAgGCCGCGcucGACGacuUCGAgGCGGu -3'
miRNA:   3'- gcUGUUgCGGCGC---UUGU---AGUUgUGCC- -5'
26645 3' -50.7 NC_005808.1 + 36225 0.66 0.91681
Target:  5'- gCGACAccacCGcCCGCGAagGCGUCGccgucGCGCaGGa -3'
miRNA:   3'- -GCUGUu---GC-GGCGCU--UGUAGU-----UGUG-CC- -5'
26645 3' -50.7 NC_005808.1 + 36210 0.67 0.873224
Target:  5'- cCGAgGGCGCCGCG-GCGgcCGACcUGGu -3'
miRNA:   3'- -GCUgUUGCGGCGCuUGUa-GUUGuGCC- -5'
26645 3' -50.7 NC_005808.1 + 36153 0.68 0.820111
Target:  5'- aCGGCGACGCCuucGCGGGCGgugguguCGCGa -3'
miRNA:   3'- -GCUGUUGCGG---CGCUUGUaguu---GUGCc -5'
26645 3' -50.7 NC_005808.1 + 35596 0.67 0.873224
Target:  5'- gCGGCAGCGUCGUuuGAACA--GGCugGCGGu -3'
miRNA:   3'- -GCUGUUGCGGCG--CUUGUagUUG--UGCC- -5'
26645 3' -50.7 NC_005808.1 + 35472 0.76 0.373599
Target:  5'- cCGACGACuUCGCGGACGUgAGCGgGGa -3'
miRNA:   3'- -GCUGUUGcGGCGCUUGUAgUUGUgCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.