miRNA display CGI


Results 41 - 60 of 228 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26645 5' -53 NC_005808.1 + 5691 0.92 0.023417
Target:  5'- gGCCAccuCGCCAACaUCGACGCCGUGGCu -3'
miRNA:   3'- -CGGUu--GCGGUUGcAGUUGUGGCACCG- -5'
26645 5' -53 NC_005808.1 + 6327 0.67 0.712392
Target:  5'- cCCAGCGCgCAGa-UCAaccGCACCGUuaccGGCg -3'
miRNA:   3'- cGGUUGCG-GUUgcAGU---UGUGGCA----CCG- -5'
26645 5' -53 NC_005808.1 + 6496 0.73 0.390955
Target:  5'- aGCCAagaccgugacagGCGCCAACGaCAugggccgcgacuACACCG-GGCc -3'
miRNA:   3'- -CGGU------------UGCGGUUGCaGU------------UGUGGCaCCG- -5'
26645 5' -53 NC_005808.1 + 6676 0.74 0.346404
Target:  5'- cGCC-ACGCCGAUGuUCAGgGCCGUGu- -3'
miRNA:   3'- -CGGuUGCGGUUGC-AGUUgUGGCACcg -5'
26645 5' -53 NC_005808.1 + 7246 0.67 0.744989
Target:  5'- cCCGgcuGCGUCAggGCGUCAGCGCguCG-GGCc -3'
miRNA:   3'- cGGU---UGCGGU--UGCAGUUGUG--GCaCCG- -5'
26645 5' -53 NC_005808.1 + 7741 0.66 0.786708
Target:  5'- uGCCAuuccuGCGCaguCAGCGauugCAGCACCG-GcGCg -3'
miRNA:   3'- -CGGU-----UGCG---GUUGCa---GUUGUGGCaC-CG- -5'
26645 5' -53 NC_005808.1 + 7839 0.68 0.690223
Target:  5'- gGUgGACGCCGGCG-CAgaucGCGCCG-GuGCu -3'
miRNA:   3'- -CGgUUGCGGUUGCaGU----UGUGGCaC-CG- -5'
26645 5' -53 NC_005808.1 + 8282 0.7 0.577667
Target:  5'- gGCCGcCGaCCAGCG-CGACuacgagGCCGUGcGCg -3'
miRNA:   3'- -CGGUuGC-GGUUGCaGUUG------UGGCAC-CG- -5'
26645 5' -53 NC_005808.1 + 8459 0.7 0.555409
Target:  5'- gGCCGACuggcuacgcaGCCAGCG-CGAgGCCG-GGUu -3'
miRNA:   3'- -CGGUUG----------CGGUUGCaGUUgUGGCaCCG- -5'
26645 5' -53 NC_005808.1 + 8745 0.67 0.701343
Target:  5'- aCCAACGCCGAgGUC-GCGC---GGCa -3'
miRNA:   3'- cGGUUGCGGUUgCAGuUGUGgcaCCG- -5'
26645 5' -53 NC_005808.1 + 8959 0.67 0.716789
Target:  5'- cGCCGauaGCGCCAuucacaaugaugcccGCGcCcGCuuCGUGGCg -3'
miRNA:   3'- -CGGU---UGCGGU---------------UGCaGuUGugGCACCG- -5'
26645 5' -53 NC_005808.1 + 9147 0.66 0.806599
Target:  5'- gGCCucGCgGCCAgugaggggaugcACccCGAUACCGUGGCc -3'
miRNA:   3'- -CGGu-UG-CGGU------------UGcaGUUGUGGCACCG- -5'
26645 5' -53 NC_005808.1 + 9256 0.69 0.630585
Target:  5'- cGCCGAgcagGCCAACGUCGACggcgccaaguugucGCUGccGGCc -3'
miRNA:   3'- -CGGUUg---CGGUUGCAGUUG--------------UGGCa-CCG- -5'
26645 5' -53 NC_005808.1 + 9320 0.68 0.690223
Target:  5'- uGgCGGCGC--ACGUCGGCGCgGcgGGCg -3'
miRNA:   3'- -CgGUUGCGguUGCAGUUGUGgCa-CCG- -5'
26645 5' -53 NC_005808.1 + 9384 0.72 0.419421
Target:  5'- cGCC-GCGCCGACGU--GCGCCGccaGGUc -3'
miRNA:   3'- -CGGuUGCGGUUGCAguUGUGGCa--CCG- -5'
26645 5' -53 NC_005808.1 + 9437 0.66 0.776502
Target:  5'- -aUAGCGUCGuuggucGCGUCcACGCCGagGGCc -3'
miRNA:   3'- cgGUUGCGGU------UGCAGuUGUGGCa-CCG- -5'
26645 5' -53 NC_005808.1 + 9466 0.67 0.734227
Target:  5'- aGCCcGCgGCCuGCG-CGACAUgcaGUGGCu -3'
miRNA:   3'- -CGGuUG-CGGuUGCaGUUGUGg--CACCG- -5'
26645 5' -53 NC_005808.1 + 9493 0.7 0.555409
Target:  5'- cGUC-AUGCCAGCcuGUUc-CGCCGUGGCg -3'
miRNA:   3'- -CGGuUGCGGUUG--CAGuuGUGGCACCG- -5'
26645 5' -53 NC_005808.1 + 9921 0.67 0.734227
Target:  5'- cGCCggUGCC-ACGcucaUCGACGCCGaaaccgaGGUg -3'
miRNA:   3'- -CGGuuGCGGuUGC----AGUUGUGGCa------CCG- -5'
26645 5' -53 NC_005808.1 + 10379 0.68 0.652046
Target:  5'- aGUCGAuguCGCCGAUGUCcgggugaugcagcGCGCCGaUGGCc -3'
miRNA:   3'- -CGGUU---GCGGUUGCAGu------------UGUGGC-ACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.