miRNA display CGI


Results 21 - 40 of 228 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26645 5' -53 NC_005808.1 + 4018 0.69 0.60462
Target:  5'- cGCCGGCcaCCAGCGUCAugccgcgcgggucgaGCgcaGCCG-GGCg -3'
miRNA:   3'- -CGGUUGc-GGUUGCAGU---------------UG---UGGCaCCG- -5'
26645 5' -53 NC_005808.1 + 4067 0.67 0.712392
Target:  5'- gGCCGGCGCguuuugggcggaCAucuaucugcuagGCGUCAACcaccugACCGaUGGCa -3'
miRNA:   3'- -CGGUUGCG------------GU------------UGCAGUUG------UGGC-ACCG- -5'
26645 5' -53 NC_005808.1 + 4156 0.69 0.622676
Target:  5'- aGCCGcccaccuugcGCGCCGugGUCGAgguguaGCCaGUGGg -3'
miRNA:   3'- -CGGU----------UGCGGUugCAGUUg-----UGG-CACCg -5'
26645 5' -53 NC_005808.1 + 4255 0.79 0.169356
Target:  5'- aGUCggUGCCGGcCGUCAGCGCCGgcaUGGUg -3'
miRNA:   3'- -CGGuuGCGGUU-GCAGUUGUGGC---ACCG- -5'
26645 5' -53 NC_005808.1 + 4262 0.68 0.645273
Target:  5'- cGCCGAUuCCAACuuuUCGGCGCCcacUGGCu -3'
miRNA:   3'- -CGGUUGcGGUUGc--AGUUGUGGc--ACCG- -5'
26645 5' -53 NC_005808.1 + 4323 0.73 0.381751
Target:  5'- uGCCGGCGCUGACGgcCGGCACCGa--- -3'
miRNA:   3'- -CGGUUGCGGUUGCa-GUUGUGGCaccg -5'
26645 5' -53 NC_005808.1 + 4436 0.7 0.522524
Target:  5'- cGCCAGggggaagcCGCCAGCGgUGGCACCGUcauGCa -3'
miRNA:   3'- -CGGUU--------GCGGUUGCaGUUGUGGCAc--CG- -5'
26645 5' -53 NC_005808.1 + 4825 0.71 0.511726
Target:  5'- gGCgAACGCCGagaACaUCGcgGCCGUGGCc -3'
miRNA:   3'- -CGgUUGCGGU---UGcAGUugUGGCACCG- -5'
26645 5' -53 NC_005808.1 + 4946 0.67 0.712392
Target:  5'- -aCGAgGCCGcCGUCGccGCGCUG-GGCa -3'
miRNA:   3'- cgGUUgCGGUuGCAGU--UGUGGCaCCG- -5'
26645 5' -53 NC_005808.1 + 4977 0.78 0.199971
Target:  5'- aUCGcUGCCGACGUUucCACCGUGGCc -3'
miRNA:   3'- cGGUuGCGGUUGCAGuuGUGGCACCG- -5'
26645 5' -53 NC_005808.1 + 5179 0.67 0.712392
Target:  5'- uGCCAcCGCCugcacguCGUCGAUAUUGccGGCu -3'
miRNA:   3'- -CGGUuGCGGuu-----GCAGUUGUGGCa-CCG- -5'
26645 5' -53 NC_005808.1 + 5239 0.67 0.744989
Target:  5'- cGCCAcgguguugACGUUGGCGUUGGCACC--GGCc -3'
miRNA:   3'- -CGGU--------UGCGGUUGCAGUUGUGGcaCCG- -5'
26645 5' -53 NC_005808.1 + 5308 1.15 0.000542
Target:  5'- uGCCAACGCCAACGUCAACACCGUGGCg -3'
miRNA:   3'- -CGGUUGCGGUUGCAGUUGUGGCACCG- -5'
26645 5' -53 NC_005808.1 + 5339 0.76 0.241663
Target:  5'- -aCAACGCCGcgaACaUCAACACgGUGGCc -3'
miRNA:   3'- cgGUUGCGGU---UGcAGUUGUGgCACCG- -5'
26645 5' -53 NC_005808.1 + 5379 0.86 0.057811
Target:  5'- uCCGugGCCGGCGaccuggaaaauaUCGACGCCGUGGCc -3'
miRNA:   3'- cGGUugCGGUUGC------------AGUUGUGGCACCG- -5'
26645 5' -53 NC_005808.1 + 5410 0.77 0.217016
Target:  5'- gGCUGuCGCCAACGacaUCGACAgCGUGGUa -3'
miRNA:   3'- -CGGUuGCGGUUGC---AGUUGUgGCACCG- -5'
26645 5' -53 NC_005808.1 + 5560 0.67 0.712392
Target:  5'- cGCCAcgguaucgacgGCGCCAACGcuggcCGcCACCGUGuCg -3'
miRNA:   3'- -CGGU-----------UGCGGUUGCa----GUuGUGGCACcG- -5'
26645 5' -53 NC_005808.1 + 5620 0.74 0.337941
Target:  5'- aGCCAcgGCGUCGAUGUUGGCGagGUGGCc -3'
miRNA:   3'- -CGGU--UGCGGUUGCAGUUGUggCACCG- -5'
26645 5' -53 NC_005808.1 + 5632 0.89 0.036867
Target:  5'- gGCCAGCGUUGGCGccgUCGAUACCGUGGCg -3'
miRNA:   3'- -CGGUUGCGGUUGC---AGUUGUGGCACCG- -5'
26645 5' -53 NC_005808.1 + 5661 0.7 0.555409
Target:  5'- aCCAACgagGCgGACaUCGACACgGUGGCn -3'
miRNA:   3'- cGGUUG---CGgUUGcAGUUGUGgCACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.