miRNA display CGI


Results 1 - 20 of 228 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26645 5' -53 NC_005808.1 + 287 0.71 0.468498
Target:  5'- cGCCAAUGCCGagguGCGcCAGuuCGCCGUgucgcccGGCa -3'
miRNA:   3'- -CGGUUGCGGU----UGCaGUU--GUGGCA-------CCG- -5'
26645 5' -53 NC_005808.1 + 493 0.67 0.734227
Target:  5'- cCCAACgacaagguacgGCCGACGaUCAcCGCCGUGcuGCu -3'
miRNA:   3'- cGGUUG-----------CGGUUGC-AGUuGUGGCAC--CG- -5'
26645 5' -53 NC_005808.1 + 605 0.69 0.611386
Target:  5'- cGCCugcGgGUCGGCcagCAGCGCCGUGGa -3'
miRNA:   3'- -CGGu--UgCGGUUGca-GUUGUGGCACCg -5'
26645 5' -53 NC_005808.1 + 671 0.71 0.501022
Target:  5'- aGCCAccaggcCGCCuACGgCGGCGCCGgccgGGCc -3'
miRNA:   3'- -CGGUu-----GCGGuUGCaGUUGUGGCa---CCG- -5'
26645 5' -53 NC_005808.1 + 690 0.67 0.734227
Target:  5'- cGCCgGACGCCGuguCcaCGGCGCUGcUGGCc -3'
miRNA:   3'- -CGG-UUGCGGUu--GcaGUUGUGGC-ACCG- -5'
26645 5' -53 NC_005808.1 + 743 0.73 0.36378
Target:  5'- gGCCGGCGCCGcCGUaGGCGgCCugGUGGCu -3'
miRNA:   3'- -CGGUUGCGGUuGCAgUUGU-GG--CACCG- -5'
26645 5' -53 NC_005808.1 + 1002 0.67 0.712392
Target:  5'- uGCCGugGUucaccgCAGCGUCgAACACC-UGGa -3'
miRNA:   3'- -CGGUugCG------GUUGCAG-UUGUGGcACCg -5'
26645 5' -53 NC_005808.1 + 1118 0.67 0.723357
Target:  5'- --gGACGCCGguucGCGgCGACaugcugccgccgGCCGUGGCc -3'
miRNA:   3'- cggUUGCGGU----UGCaGUUG------------UGGCACCG- -5'
26645 5' -53 NC_005808.1 + 1204 0.66 0.75563
Target:  5'- cGCCGuagcgcgaGCUAACGguuACACCG-GGCc -3'
miRNA:   3'- -CGGUug------CGGUUGCaguUGUGGCaCCG- -5'
26645 5' -53 NC_005808.1 + 1330 0.68 0.690223
Target:  5'- gGCCGACaagcgcgaggaaGCCGugGUCGGCgGCCuUGcGCa -3'
miRNA:   3'- -CGGUUG------------CGGUugCAGUUG-UGGcAC-CG- -5'
26645 5' -53 NC_005808.1 + 1708 0.67 0.723357
Target:  5'- cGCCGugGgCCGGCGU----GCCGgcgagGGCg -3'
miRNA:   3'- -CGGUugC-GGUUGCAguugUGGCa----CCG- -5'
26645 5' -53 NC_005808.1 + 2161 0.67 0.723357
Target:  5'- cGUCAuuggGCGCgcuaCAugGaCGACAUCGUGGUg -3'
miRNA:   3'- -CGGU----UGCG----GUugCaGUUGUGGCACCG- -5'
26645 5' -53 NC_005808.1 + 2206 0.73 0.36378
Target:  5'- uGCCGACGCCcuCGUCGgguagcaccacGCGCagcaggcggcgCGUGGCc -3'
miRNA:   3'- -CGGUUGCGGuuGCAGU-----------UGUG-----------GCACCG- -5'
26645 5' -53 NC_005808.1 + 2216 0.7 0.522524
Target:  5'- cGCCAACGUguACGgCGGCGCgGUugaccGGCu -3'
miRNA:   3'- -CGGUUGCGguUGCaGUUGUGgCA-----CCG- -5'
26645 5' -53 NC_005808.1 + 2533 0.73 0.390955
Target:  5'- cGCCuugugcagcACGCCu-UGUgCAACAUCGUGGCg -3'
miRNA:   3'- -CGGu--------UGCGGuuGCA-GUUGUGGCACCG- -5'
26645 5' -53 NC_005808.1 + 3544 0.69 0.632845
Target:  5'- uGCCAGCuGCCGccgaacaGCG-CAGCAgCG-GGCu -3'
miRNA:   3'- -CGGUUG-CGGU-------UGCaGUUGUgGCaCCG- -5'
26645 5' -53 NC_005808.1 + 3679 0.7 0.576549
Target:  5'- uGCaCAACGCCccacuugGACGUgAagauguuccacGCGCuCGUGGCg -3'
miRNA:   3'- -CG-GUUGCGG-------UUGCAgU-----------UGUG-GCACCG- -5'
26645 5' -53 NC_005808.1 + 3731 0.67 0.744989
Target:  5'- uGCCGuucACGCCGguggugggcACGUCggUGCCGccGCu -3'
miRNA:   3'- -CGGU---UGCGGU---------UGCAGuuGUGGCacCG- -5'
26645 5' -53 NC_005808.1 + 3795 0.71 0.479918
Target:  5'- aGCCAGCGCCuggaauuCGUUguaguugggcaGGCgcuuGCCGUGGUg -3'
miRNA:   3'- -CGGUUGCGGuu-----GCAG-----------UUG----UGGCACCG- -5'
26645 5' -53 NC_005808.1 + 3885 0.66 0.786708
Target:  5'- gGCC-GCGCUGcCGUCGcCGCCGaacuUGGUa -3'
miRNA:   3'- -CGGuUGCGGUuGCAGUuGUGGC----ACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.