miRNA display CGI


Results 1 - 20 of 228 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26645 5' -53 NC_005808.1 + 42490 0.72 0.429185
Target:  5'- uGCCGcgcgcagaAUGCCGGCGUCAucccCGCCaucagcaucaugGUGGCg -3'
miRNA:   3'- -CGGU--------UGCGGUUGCAGUu---GUGG------------CACCG- -5'
26645 5' -53 NC_005808.1 + 42266 0.66 0.776502
Target:  5'- gGCCAGCGCgCGACuguugagCAGCACguCGcgGGCc -3'
miRNA:   3'- -CGGUUGCG-GUUGca-----GUUGUG--GCa-CCG- -5'
26645 5' -53 NC_005808.1 + 41981 0.67 0.744989
Target:  5'- cGCCGAgGCUGAgGcCAucauCGCCGacaUGGCg -3'
miRNA:   3'- -CGGUUgCGGUUgCaGUu---GUGGC---ACCG- -5'
26645 5' -53 NC_005808.1 + 41942 0.69 0.611386
Target:  5'- gGCCAcgGCCAA-GUCgAGCGCC-UGGCg -3'
miRNA:   3'- -CGGUugCGGUUgCAG-UUGUGGcACCG- -5'
26645 5' -53 NC_005808.1 + 41868 0.74 0.346404
Target:  5'- gGUCAucCGCCAgGCGcUCGACuugGCCGUGGCc -3'
miRNA:   3'- -CGGUu-GCGGU-UGC-AGUUG---UGGCACCG- -5'
26645 5' -53 NC_005808.1 + 41659 0.7 0.565398
Target:  5'- uGCCcGCGCCAcuggccgggaaauAC-UCGGCcaugcugaacguGCCGUGGCg -3'
miRNA:   3'- -CGGuUGCGGU-------------UGcAGUUG------------UGGCACCG- -5'
26645 5' -53 NC_005808.1 + 41097 0.66 0.786708
Target:  5'- gGgCAACGUCAucaaguACGUgAGC-CgGUGGCg -3'
miRNA:   3'- -CgGUUGCGGU------UGCAgUUGuGgCACCG- -5'
26645 5' -53 NC_005808.1 + 40907 0.69 0.633976
Target:  5'- gGUCAugGCCGGCcu--GCGCC-UGGCg -3'
miRNA:   3'- -CGGUugCGGUUGcaguUGUGGcACCG- -5'
26645 5' -53 NC_005808.1 + 40819 0.68 0.656558
Target:  5'- aGCCAGgauguUGCCGcCGUCuuGCAgguucagcCCGUGGCc -3'
miRNA:   3'- -CGGUU-----GCGGUuGCAGu-UGU--------GGCACCG- -5'
26645 5' -53 NC_005808.1 + 40727 0.67 0.730977
Target:  5'- gGCCAGCGCCGGCcacgggcugaaccugCAAgACgGcGGCa -3'
miRNA:   3'- -CGGUUGCGGUUGca-------------GUUgUGgCaCCG- -5'
26645 5' -53 NC_005808.1 + 40568 0.69 0.633976
Target:  5'- gGCCcaggugguCGCCGuguCGUCGguauagauuGCGCCGuUGGCg -3'
miRNA:   3'- -CGGuu------GCGGUu--GCAGU---------UGUGGC-ACCG- -5'
26645 5' -53 NC_005808.1 + 40364 0.66 0.786708
Target:  5'- gGCCAAgGcCCGGCGUUuAUACCGcgacaUGGa -3'
miRNA:   3'- -CGGUUgC-GGUUGCAGuUGUGGC-----ACCg -5'
26645 5' -53 NC_005808.1 + 39827 0.67 0.701343
Target:  5'- gGCCA-CGCgCAGCGgcgcCAGCACCagcgaggGGCc -3'
miRNA:   3'- -CGGUuGCG-GUUGCa---GUUGUGGca-----CCG- -5'
26645 5' -53 NC_005808.1 + 39827 0.67 0.712392
Target:  5'- uGCgCAACGUCGAggUGUCGGCAgUGgucGGCa -3'
miRNA:   3'- -CG-GUUGCGGUU--GCAGUUGUgGCa--CCG- -5'
26645 5' -53 NC_005808.1 + 39764 0.69 0.588872
Target:  5'- uGCUGGCGCCGcuGCG-CGugGCCGcgagcaccUGGCc -3'
miRNA:   3'- -CGGUUGCGGU--UGCaGUugUGGC--------ACCG- -5'
26645 5' -53 NC_005808.1 + 39397 0.67 0.723357
Target:  5'- aGCUuccGCGCCAGauaGUCGGC-CCGUGccuuuGCg -3'
miRNA:   3'- -CGGu--UGCGGUUg--CAGUUGuGGCAC-----CG- -5'
26645 5' -53 NC_005808.1 + 38485 0.74 0.337941
Target:  5'- aGCCGACGaCCGcgACGaauUCAGCGCCGcccaccUGGCc -3'
miRNA:   3'- -CGGUUGC-GGU--UGC---AGUUGUGGC------ACCG- -5'
26645 5' -53 NC_005808.1 + 38277 0.66 0.75563
Target:  5'- aGCCAgGCGCC---GUC-GCGCCG-GGCc -3'
miRNA:   3'- -CGGU-UGCGGuugCAGuUGUGGCaCCG- -5'
26645 5' -53 NC_005808.1 + 38008 0.8 0.151343
Target:  5'- gGCCAucGCGUCAAgGUCGAUGCCGUaGGUa -3'
miRNA:   3'- -CGGU--UGCGGUUgCAGUUGUGGCA-CCG- -5'
26645 5' -53 NC_005808.1 + 38002 0.67 0.744989
Target:  5'- cGCCGAgGCCGAgcaGUUccuCGCC-UGGCg -3'
miRNA:   3'- -CGGUUgCGGUUg--CAGuu-GUGGcACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.