Results 1 - 20 of 228 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26645 | 5' | -53 | NC_005808.1 | + | 3885 | 0.66 | 0.786708 |
Target: 5'- gGCC-GCGCUGcCGUCGcCGCCGaacuUGGUa -3' miRNA: 3'- -CGGuUGCGGUuGCAGUuGUGGC----ACCG- -5' |
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26645 | 5' | -53 | NC_005808.1 | + | 22770 | 0.66 | 0.806599 |
Target: 5'- gGUgAGgGCCGAUugGUCAACGCCcugcgGGCc -3' miRNA: 3'- -CGgUUgCGGUUG--CAGUUGUGGca---CCG- -5' |
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26645 | 5' | -53 | NC_005808.1 | + | 26502 | 0.66 | 0.790744 |
Target: 5'- cGCCGACucgcaaGCCGGCaUCAuuCACCGccacgguuuucagcaUGGCg -3' miRNA: 3'- -CGGUUG------CGGUUGcAGUu-GUGGC---------------ACCG- -5' |
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26645 | 5' | -53 | NC_005808.1 | + | 33653 | 0.66 | 0.776502 |
Target: 5'- gGCCAcCGCUGGCGaauccggCAcggcCACCGcUGGCg -3' miRNA: 3'- -CGGUuGCGGUUGCa------GUu---GUGGC-ACCG- -5' |
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26645 | 5' | -53 | NC_005808.1 | + | 37489 | 0.66 | 0.786708 |
Target: 5'- -aCGGCGCCAGCc---GCACCGgacgcugGGCc -3' miRNA: 3'- cgGUUGCGGUUGcaguUGUGGCa------CCG- -5' |
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26645 | 5' | -53 | NC_005808.1 | + | 15620 | 0.66 | 0.806599 |
Target: 5'- -aCGGCGCCAuugaccuggACGUggaggcCGGCACCGUG-Ca -3' miRNA: 3'- cgGUUGCGGU---------UGCA------GUUGUGGCACcG- -5' |
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26645 | 5' | -53 | NC_005808.1 | + | 34957 | 0.66 | 0.75563 |
Target: 5'- gGCCGGCuuGCCGAUGaacugCAGCGCaCGcucGGCg -3' miRNA: 3'- -CGGUUG--CGGUUGCa----GUUGUG-GCa--CCG- -5' |
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26645 | 5' | -53 | NC_005808.1 | + | 7741 | 0.66 | 0.786708 |
Target: 5'- uGCCAuuccuGCGCaguCAGCGauugCAGCACCG-GcGCg -3' miRNA: 3'- -CGGU-----UGCG---GUUGCa---GUUGUGGCaC-CG- -5' |
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26645 | 5' | -53 | NC_005808.1 | + | 32321 | 0.66 | 0.786708 |
Target: 5'- cGCCAucaAgGCCGGCGUCccGACaACCGccGCc -3' miRNA: 3'- -CGGU---UgCGGUUGCAG--UUG-UGGCacCG- -5' |
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26645 | 5' | -53 | NC_005808.1 | + | 28220 | 0.66 | 0.75563 |
Target: 5'- gGCCA-CGCCGACGaCcACGCgCG-GGUc -3' miRNA: 3'- -CGGUuGCGGUUGCaGuUGUG-GCaCCG- -5' |
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26645 | 5' | -53 | NC_005808.1 | + | 24678 | 0.66 | 0.75563 |
Target: 5'- cGCCGcGgGCC-ACGUCcACGCCcaGGCu -3' miRNA: 3'- -CGGU-UgCGGuUGCAGuUGUGGcaCCG- -5' |
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26645 | 5' | -53 | NC_005808.1 | + | 31990 | 0.66 | 0.75985 |
Target: 5'- cUCGACGCCAGCGUCcugugcgaaacccucGACACgcUGGa -3' miRNA: 3'- cGGUUGCGGUUGCAG---------------UUGUGgcACCg -5' |
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26645 | 5' | -53 | NC_005808.1 | + | 30130 | 0.66 | 0.776502 |
Target: 5'- cGCCAgaacACGCCGccggccugcaccGCGUCGgACAUCaGcGGCa -3' miRNA: 3'- -CGGU----UGCGGU------------UGCAGU-UGUGG-CaCCG- -5' |
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26645 | 5' | -53 | NC_005808.1 | + | 34158 | 0.66 | 0.776502 |
Target: 5'- cGCCGacaucGCGCCGAUGUuccgCGACGCCcccGCg -3' miRNA: 3'- -CGGU-----UGCGGUUGCA----GUUGUGGcacCG- -5' |
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26645 | 5' | -53 | NC_005808.1 | + | 12996 | 0.66 | 0.773409 |
Target: 5'- cGCC--CGCCGuucucguacaggccGCG-CAGCGCaGUGGCg -3' miRNA: 3'- -CGGuuGCGGU--------------UGCaGUUGUGgCACCG- -5' |
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26645 | 5' | -53 | NC_005808.1 | + | 9437 | 0.66 | 0.776502 |
Target: 5'- -aUAGCGUCGuuggucGCGUCcACGCCGagGGCc -3' miRNA: 3'- cgGUUGCGGU------UGCAGuUGUGGCa-CCG- -5' |
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26645 | 5' | -53 | NC_005808.1 | + | 41097 | 0.66 | 0.786708 |
Target: 5'- gGgCAACGUCAucaaguACGUgAGC-CgGUGGCg -3' miRNA: 3'- -CgGUUGCGGU------UGCAgUUGuGgCACCG- -5' |
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26645 | 5' | -53 | NC_005808.1 | + | 19878 | 0.66 | 0.776502 |
Target: 5'- uGCCGaagGCGUCGcGCGcCuuCuugGCCGUGGCa -3' miRNA: 3'- -CGGU---UGCGGU-UGCaGuuG---UGGCACCG- -5' |
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26645 | 5' | -53 | NC_005808.1 | + | 24516 | 0.66 | 0.785695 |
Target: 5'- cGCCcACGCCGaucACGUCcagguggAugACCGcgUGGUc -3' miRNA: 3'- -CGGuUGCGGU---UGCAG-------UugUGGC--ACCG- -5' |
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26645 | 5' | -53 | NC_005808.1 | + | 40364 | 0.66 | 0.786708 |
Target: 5'- gGCCAAgGcCCGGCGUUuAUACCGcgacaUGGa -3' miRNA: 3'- -CGGUUgC-GGUUGCAGuUGUGGC-----ACCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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