miRNA display CGI


Results 1 - 20 of 228 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26645 5' -53 NC_005808.1 + 35247 0.73 0.400303
Target:  5'- -aCGACGCCGAgGUCGAgGCCGcgcucaaGGCc -3'
miRNA:   3'- cgGUUGCGGUUgCAGUUgUGGCa------CCG- -5'
26645 5' -53 NC_005808.1 + 5620 0.74 0.337941
Target:  5'- aGCCAcgGCGUCGAUGUUGGCGagGUGGCc -3'
miRNA:   3'- -CGGU--UGCGGUUGCAGUUGUggCACCG- -5'
26645 5' -53 NC_005808.1 + 38485 0.74 0.337941
Target:  5'- aGCCGACGaCCGcgACGaauUCAGCGCCGcccaccUGGCc -3'
miRNA:   3'- -CGGUUGC-GGU--UGC---AGUUGUGGC------ACCG- -5'
26645 5' -53 NC_005808.1 + 41868 0.74 0.346404
Target:  5'- gGUCAucCGCCAgGCGcUCGACuugGCCGUGGCc -3'
miRNA:   3'- -CGGUu-GCGGU-UGC-AGUUG---UGGCACCG- -5'
26645 5' -53 NC_005808.1 + 6676 0.74 0.346404
Target:  5'- cGCC-ACGCCGAUGuUCAGgGCCGUGu- -3'
miRNA:   3'- -CGGuUGCGGUUGC-AGUUgUGGCACcg -5'
26645 5' -53 NC_005808.1 + 37622 0.74 0.349831
Target:  5'- cGCCAACGUCAugGaacugaccagCAgcgcgauacgcggcuGCAUCGUGGCg -3'
miRNA:   3'- -CGGUUGCGGUugCa---------GU---------------UGUGGCACCG- -5'
26645 5' -53 NC_005808.1 + 2206 0.73 0.36378
Target:  5'- uGCCGACGCCcuCGUCGgguagcaccacGCGCagcaggcggcgCGUGGCc -3'
miRNA:   3'- -CGGUUGCGGuuGCAGU-----------UGUG-----------GCACCG- -5'
26645 5' -53 NC_005808.1 + 18389 0.73 0.372691
Target:  5'- uGCCGaugGCGCCGguggcggccACGUCGGCGaagGUGGCg -3'
miRNA:   3'- -CGGU---UGCGGU---------UGCAGUUGUgg-CACCG- -5'
26645 5' -53 NC_005808.1 + 33611 0.73 0.381751
Target:  5'- gGCCAcCGCUGGCGgcaCGGcCACCGcUGGCg -3'
miRNA:   3'- -CGGUuGCGGUUGCa--GUU-GUGGC-ACCG- -5'
26645 5' -53 NC_005808.1 + 25085 0.74 0.32963
Target:  5'- cCCAGCGCagcGCGccCGGCGCCGUGGg -3'
miRNA:   3'- cGGUUGCGgu-UGCa-GUUGUGGCACCg -5'
26645 5' -53 NC_005808.1 + 36064 0.74 0.321471
Target:  5'- cGUCAACGCCAGCaUCGA-ACUGUGGg -3'
miRNA:   3'- -CGGUUGCGGUUGcAGUUgUGGCACCg -5'
26645 5' -53 NC_005808.1 + 35849 0.75 0.305608
Target:  5'- cGCCAaggaaaagugggGCGCCAAgGcCGACGCCGUGcucaaGCa -3'
miRNA:   3'- -CGGU------------UGCGGUUgCaGUUGUGGCAC-----CG- -5'
26645 5' -53 NC_005808.1 + 23096 0.81 0.127576
Target:  5'- cCCGACGCCAACGgCGGCGCCcacGGCg -3'
miRNA:   3'- cGGUUGCGGUUGCaGUUGUGGca-CCG- -5'
26645 5' -53 NC_005808.1 + 4255 0.79 0.169356
Target:  5'- aGUCggUGCCGGcCGUCAGCGCCGgcaUGGUg -3'
miRNA:   3'- -CGGuuGCGGUU-GCAGUUGUGGC---ACCG- -5'
26645 5' -53 NC_005808.1 + 14828 0.78 0.194553
Target:  5'- uGCCuuCGCCcAgGUCGAUGCCGuUGGCg -3'
miRNA:   3'- -CGGuuGCGGuUgCAGUUGUGGC-ACCG- -5'
26645 5' -53 NC_005808.1 + 28864 0.77 0.222969
Target:  5'- cCCAGCGCCGcgccACGUCcuCGCUGcUGGCg -3'
miRNA:   3'- cGGUUGCGGU----UGCAGuuGUGGC-ACCG- -5'
26645 5' -53 NC_005808.1 + 18270 0.77 0.23529
Target:  5'- cGCCGAgaacuUGCCGGcCGUCAGCggGCCgGUGGCg -3'
miRNA:   3'- -CGGUU-----GCGGUU-GCAGUUG--UGG-CACCG- -5'
26645 5' -53 NC_005808.1 + 23760 0.76 0.254839
Target:  5'- uGCCGGCGCCAcCGggccgauGCGCCGcGGCu -3'
miRNA:   3'- -CGGUUGCGGUuGCagu----UGUGGCaCCG- -5'
26645 5' -53 NC_005808.1 + 13306 0.75 0.305608
Target:  5'- cGCCGGgGCCGGCGUUguaGGCGgCGUaGGCu -3'
miRNA:   3'- -CGGUUgCGGUUGCAG---UUGUgGCA-CCG- -5'
26645 5' -53 NC_005808.1 + 14977 0.75 0.305608
Target:  5'- cGCCGGuCGCCAgaaugGCGUCGGCAU--UGGCg -3'
miRNA:   3'- -CGGUU-GCGGU-----UGCAGUUGUGgcACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.