miRNA display CGI


Results 1 - 20 of 228 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26645 5' -53 NC_005808.1 + 5308 1.15 0.000542
Target:  5'- uGCCAACGCCAACGUCAACACCGUGGCg -3'
miRNA:   3'- -CGGUUGCGGUUGCAGUUGUGGCACCG- -5'
26645 5' -53 NC_005808.1 + 743 0.73 0.36378
Target:  5'- gGCCGGCGCCGcCGUaGGCGgCCugGUGGCu -3'
miRNA:   3'- -CGGUUGCGGUuGCAgUUGU-GG--CACCG- -5'
26645 5' -53 NC_005808.1 + 6496 0.73 0.390955
Target:  5'- aGCCAagaccgugacagGCGCCAACGaCAugggccgcgacuACACCG-GGCc -3'
miRNA:   3'- -CGGU------------UGCGGUUGCaGU------------UGUGGCaCCG- -5'
26645 5' -53 NC_005808.1 + 15620 0.66 0.806599
Target:  5'- -aCGGCGCCAuugaccuggACGUggaggcCGGCACCGUG-Ca -3'
miRNA:   3'- cgGUUGCGGU---------UGCA------GUUGUGGCACcG- -5'
26645 5' -53 NC_005808.1 + 38008 0.8 0.151343
Target:  5'- gGCCAucGCGUCAAgGUCGAUGCCGUaGGUa -3'
miRNA:   3'- -CGGU--UGCGGUUgCAGUUGUGGCA-CCG- -5'
26645 5' -53 NC_005808.1 + 4977 0.78 0.199971
Target:  5'- aUCGcUGCCGACGUUucCACCGUGGCc -3'
miRNA:   3'- cGGUuGCGGUUGCAGuuGUGGCACCG- -5'
26645 5' -53 NC_005808.1 + 5410 0.77 0.217016
Target:  5'- gGCUGuCGCCAACGacaUCGACAgCGUGGUa -3'
miRNA:   3'- -CGGUuGCGGUUGC---AGUUGUgGCACCG- -5'
26645 5' -53 NC_005808.1 + 5339 0.76 0.241663
Target:  5'- -aCAACGCCGcgaACaUCAACACgGUGGCc -3'
miRNA:   3'- cgGUUGCGGU---UGcAGUUGUGgCACCG- -5'
26645 5' -53 NC_005808.1 + 20683 0.76 0.254839
Target:  5'- gGCCGACaCCGACcugCGACGCCGccUGGCg -3'
miRNA:   3'- -CGGUUGcGGUUGca-GUUGUGGC--ACCG- -5'
26645 5' -53 NC_005808.1 + 12216 0.74 0.337941
Target:  5'- cCCGACGCCuacGCGgaagcgCAGCG-CGUGGCg -3'
miRNA:   3'- cGGUUGCGGu--UGCa-----GUUGUgGCACCG- -5'
26645 5' -53 NC_005808.1 + 17622 0.75 0.28076
Target:  5'- aCCGGCGCCGacaucauucugaccAaucaaGUCAACGCgGUGGCg -3'
miRNA:   3'- cGGUUGCGGU--------------Ug----CAGUUGUGgCACCG- -5'
26645 5' -53 NC_005808.1 + 17725 0.76 0.254839
Target:  5'- aGCC--CGCCGACGcaUCAAgAUCGUGGCc -3'
miRNA:   3'- -CGGuuGCGGUUGC--AGUUgUGGCACCG- -5'
26645 5' -53 NC_005808.1 + 5691 0.92 0.023417
Target:  5'- gGCCAccuCGCCAACaUCGACGCCGUGGCu -3'
miRNA:   3'- -CGGUu--GCGGUUGcAGUUGUGGCACCG- -5'
26645 5' -53 NC_005808.1 + 32988 0.74 0.321471
Target:  5'- gGCCGAacaGCCAGcCGUgcAgGCCGUGGCc -3'
miRNA:   3'- -CGGUUg--CGGUU-GCAguUgUGGCACCG- -5'
26645 5' -53 NC_005808.1 + 5632 0.89 0.036867
Target:  5'- gGCCAGCGUUGGCGccgUCGAUACCGUGGCg -3'
miRNA:   3'- -CGGUUGCGGUUGC---AGUUGUGGCACCG- -5'
26645 5' -53 NC_005808.1 + 22373 0.76 0.248179
Target:  5'- gGCCAGCagcaucgugcuGcCCGACuUCGACGCCGUGGUc -3'
miRNA:   3'- -CGGUUG-----------C-GGUUGcAGUUGUGGCACCG- -5'
26645 5' -53 NC_005808.1 + 16673 0.74 0.321471
Target:  5'- aCCAACGgCGGCGcCAACACCaucgcGUGGUc -3'
miRNA:   3'- cGGUUGCgGUUGCaGUUGUGG-----CACCG- -5'
26645 5' -53 NC_005808.1 + 4323 0.73 0.381751
Target:  5'- uGCCGGCGCUGACGgcCGGCACCGa--- -3'
miRNA:   3'- -CGGUUGCGGUUGCa-GUUGUGGCaccg -5'
26645 5' -53 NC_005808.1 + 5379 0.86 0.057811
Target:  5'- uCCGugGCCGGCGaccuggaaaauaUCGACGCCGUGGCc -3'
miRNA:   3'- cGGUugCGGUUGC------------AGUUGUGGCACCG- -5'
26645 5' -53 NC_005808.1 + 15056 0.78 0.205519
Target:  5'- uGgCAACGCCAAUGcCGACGCCauucUGGCg -3'
miRNA:   3'- -CgGUUGCGGUUGCaGUUGUGGc---ACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.