miRNA display CGI


Results 41 - 60 of 228 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26645 5' -53 NC_005808.1 + 7246 0.67 0.744989
Target:  5'- cCCGgcuGCGUCAggGCGUCAGCGCguCG-GGCc -3'
miRNA:   3'- cGGU---UGCGGU--UGCAGUUGUG--GCaCCG- -5'
26645 5' -53 NC_005808.1 + 14856 0.67 0.744989
Target:  5'- gGCCAGCGCCGcACGcUgGGCGCCuuuaaGUugcccGGCu -3'
miRNA:   3'- -CGGUUGCGGU-UGC-AgUUGUGG-----CA-----CCG- -5'
26645 5' -53 NC_005808.1 + 41981 0.67 0.744989
Target:  5'- cGCCGAgGCUGAgGcCAucauCGCCGacaUGGCg -3'
miRNA:   3'- -CGGUUgCGGUUgCaGUu---GUGGC---ACCG- -5'
26645 5' -53 NC_005808.1 + 35042 0.67 0.744989
Target:  5'- cGCgCAGCGCCGGacaCGugGCCuUGGCc -3'
miRNA:   3'- -CG-GUUGCGGUUgcaGUugUGGcACCG- -5'
26645 5' -53 NC_005808.1 + 3731 0.67 0.744989
Target:  5'- uGCCGuucACGCCGguggugggcACGUCggUGCCGccGCu -3'
miRNA:   3'- -CGGU---UGCGGU---------UGCAGuuGUGGCacCG- -5'
26645 5' -53 NC_005808.1 + 5239 0.67 0.744989
Target:  5'- cGCCAcgguguugACGUUGGCGUUGGCACC--GGCc -3'
miRNA:   3'- -CGGU--------UGCGGUUGCAGUUGUGGcaCCG- -5'
26645 5' -53 NC_005808.1 + 13764 0.67 0.744989
Target:  5'- uCCAGCGCCGACaUgAGCGCaaucuuGUGcGCg -3'
miRNA:   3'- cGGUUGCGGUUGcAgUUGUGg-----CAC-CG- -5'
26645 5' -53 NC_005808.1 + 11428 0.67 0.743918
Target:  5'- aGCCGGCGUgCAggucgccgauaagGCG-CGACACCGgcagcuuuucagUGGCg -3'
miRNA:   3'- -CGGUUGCG-GU-------------UGCaGUUGUGGC------------ACCG- -5'
26645 5' -53 NC_005808.1 + 13752 0.67 0.734227
Target:  5'- aUgGACGCCGACGaCAuccuCACgGUGcGCg -3'
miRNA:   3'- cGgUUGCGGUUGCaGUu---GUGgCAC-CG- -5'
26645 5' -53 NC_005808.1 + 9466 0.67 0.734227
Target:  5'- aGCCcGCgGCCuGCG-CGACAUgcaGUGGCu -3'
miRNA:   3'- -CGGuUG-CGGuUGCaGUUGUGg--CACCG- -5'
26645 5' -53 NC_005808.1 + 9921 0.67 0.734227
Target:  5'- cGCCggUGCC-ACGcucaUCGACGCCGaaaccgaGGUg -3'
miRNA:   3'- -CGGuuGCGGuUGC----AGUUGUGGCa------CCG- -5'
26645 5' -53 NC_005808.1 + 13642 0.67 0.734227
Target:  5'- aGCgAugGCgAGCGcgcguUCAACaucGCCGUGGg -3'
miRNA:   3'- -CGgUugCGgUUGC-----AGUUG---UGGCACCg -5'
26645 5' -53 NC_005808.1 + 19836 0.67 0.734227
Target:  5'- uGCCcAgGCCGGuuuUGuUCAGCAgCGUGGUg -3'
miRNA:   3'- -CGGuUgCGGUU---GC-AGUUGUgGCACCG- -5'
26645 5' -53 NC_005808.1 + 35020 0.67 0.734227
Target:  5'- cGCCGACGaCuuCGUgGACguguccaaGCCgGUGGCg -3'
miRNA:   3'- -CGGUUGCgGuuGCAgUUG--------UGG-CACCG- -5'
26645 5' -53 NC_005808.1 + 690 0.67 0.734227
Target:  5'- cGCCgGACGCCGuguCcaCGGCGCUGcUGGCc -3'
miRNA:   3'- -CGG-UUGCGGUu--GcaGUUGUGGC-ACCG- -5'
26645 5' -53 NC_005808.1 + 29272 0.67 0.734227
Target:  5'- cGCCAugcgcGCGuCCGACcugccgGUCAuCACCGaGGCc -3'
miRNA:   3'- -CGGU-----UGC-GGUUG------CAGUuGUGGCaCCG- -5'
26645 5' -53 NC_005808.1 + 18593 0.67 0.734227
Target:  5'- gGCCAG-GCCAAUccCAACACCGgcaUGGa -3'
miRNA:   3'- -CGGUUgCGGUUGcaGUUGUGGC---ACCg -5'
26645 5' -53 NC_005808.1 + 493 0.67 0.734227
Target:  5'- cCCAACgacaagguacgGCCGACGaUCAcCGCCGUGcuGCu -3'
miRNA:   3'- cGGUUG-----------CGGUUGC-AGUuGUGGCAC--CG- -5'
26645 5' -53 NC_005808.1 + 14540 0.67 0.733145
Target:  5'- cGCCGGCGCCGgacaacaGCGaCGAgaaacccgccccUACCG-GGCu -3'
miRNA:   3'- -CGGUUGCGGU-------UGCaGUU------------GUGGCaCCG- -5'
26645 5' -53 NC_005808.1 + 40727 0.67 0.730977
Target:  5'- gGCCAGCGCCGGCcacgggcugaaccugCAAgACgGcGGCa -3'
miRNA:   3'- -CGGUUGCGGUUGca-------------GUUgUGgCaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.