miRNA display CGI


Results 21 - 40 of 228 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26645 5' -53 NC_005808.1 + 42266 0.66 0.776502
Target:  5'- gGCCAGCGCgCGACuguugagCAGCACguCGcgGGCc -3'
miRNA:   3'- -CGGUUGCG-GUUGca-----GUUGUG--GCa-CCG- -5'
26645 5' -53 NC_005808.1 + 30130 0.66 0.776502
Target:  5'- cGCCAgaacACGCCGccggccugcaccGCGUCGgACAUCaGcGGCa -3'
miRNA:   3'- -CGGU----UGCGGU------------UGCAGU-UGUGG-CaCCG- -5'
26645 5' -53 NC_005808.1 + 9437 0.66 0.776502
Target:  5'- -aUAGCGUCGuuggucGCGUCcACGCCGagGGCc -3'
miRNA:   3'- cgGUUGCGGU------UGCAGuUGUGGCa-CCG- -5'
26645 5' -53 NC_005808.1 + 19878 0.66 0.776502
Target:  5'- uGCCGaagGCGUCGcGCGcCuuCuugGCCGUGGCa -3'
miRNA:   3'- -CGGU---UGCGGU-UGCaGuuG---UGGCACCG- -5'
26645 5' -53 NC_005808.1 + 33653 0.66 0.776502
Target:  5'- gGCCAcCGCUGGCGaauccggCAcggcCACCGcUGGCg -3'
miRNA:   3'- -CGGUuGCGGUUGCa------GUu---GUGGC-ACCG- -5'
26645 5' -53 NC_005808.1 + 34158 0.66 0.776502
Target:  5'- cGCCGacaucGCGCCGAUGUuccgCGACGCCcccGCg -3'
miRNA:   3'- -CGGU-----UGCGGUUGCA----GUUGUGGcacCG- -5'
26645 5' -53 NC_005808.1 + 12996 0.66 0.773409
Target:  5'- cGCC--CGCCGuucucguacaggccGCG-CAGCGCaGUGGCg -3'
miRNA:   3'- -CGGuuGCGGU--------------UGCaGUUGUGgCACCG- -5'
26645 5' -53 NC_005808.1 + 18528 0.66 0.766139
Target:  5'- gGCCGACGCCGccgGCGcCGcgACCGUcacguuuucGGUg -3'
miRNA:   3'- -CGGUUGCGGU---UGCaGUugUGGCA---------CCG- -5'
26645 5' -53 NC_005808.1 + 28291 0.66 0.766139
Target:  5'- uCCGAccCGCgCGugGUCGuCGgCGUGGCc -3'
miRNA:   3'- cGGUU--GCG-GUugCAGUuGUgGCACCG- -5'
26645 5' -53 NC_005808.1 + 25398 0.66 0.766139
Target:  5'- gGCCGGCcuggacaaucCCGGCGaCgAGCGCCgGUGGCa -3'
miRNA:   3'- -CGGUUGc---------GGUUGCaG-UUGUGG-CACCG- -5'
26645 5' -53 NC_005808.1 + 31990 0.66 0.75985
Target:  5'- cUCGACGCCAGCGUCcugugcgaaacccucGACACgcUGGa -3'
miRNA:   3'- cGGUUGCGGUUGCAG---------------UUGUGgcACCg -5'
26645 5' -53 NC_005808.1 + 14643 0.66 0.75563
Target:  5'- aUCGGcCGCCGGCaUCAGC-CCGguaggGGCg -3'
miRNA:   3'- cGGUU-GCGGUUGcAGUUGuGGCa----CCG- -5'
26645 5' -53 NC_005808.1 + 24678 0.66 0.75563
Target:  5'- cGCCGcGgGCC-ACGUCcACGCCcaGGCu -3'
miRNA:   3'- -CGGU-UgCGGuUGCAGuUGUGGcaCCG- -5'
26645 5' -53 NC_005808.1 + 23282 0.66 0.75563
Target:  5'- gGCCGAgGCCGAgGcCGAauuCACCGacgaGGCc -3'
miRNA:   3'- -CGGUUgCGGUUgCaGUU---GUGGCa---CCG- -5'
26645 5' -53 NC_005808.1 + 23606 0.66 0.75563
Target:  5'- gGCCGAgGCCAucgaccGCGU--GCGCCGccuggaaGGCg -3'
miRNA:   3'- -CGGUUgCGGU------UGCAguUGUGGCa------CCG- -5'
26645 5' -53 NC_005808.1 + 34957 0.66 0.75563
Target:  5'- gGCCGGCuuGCCGAUGaacugCAGCGCaCGcucGGCg -3'
miRNA:   3'- -CGGUUG--CGGUUGCa----GUUGUG-GCa--CCG- -5'
26645 5' -53 NC_005808.1 + 38277 0.66 0.75563
Target:  5'- aGCCAgGCGCC---GUC-GCGCCG-GGCc -3'
miRNA:   3'- -CGGU-UGCGGuugCAGuUGUGGCaCCG- -5'
26645 5' -53 NC_005808.1 + 28220 0.66 0.75563
Target:  5'- gGCCA-CGCCGACGaCcACGCgCG-GGUc -3'
miRNA:   3'- -CGGUuGCGGUUGCaGuUGUG-GCaCCG- -5'
26645 5' -53 NC_005808.1 + 1204 0.66 0.75563
Target:  5'- cGCCGuagcgcgaGCUAACGguuACACCG-GGCc -3'
miRNA:   3'- -CGGUug------CGGUUGCaguUGUGGCaCCG- -5'
26645 5' -53 NC_005808.1 + 35042 0.67 0.744989
Target:  5'- cGCgCAGCGCCGGacaCGugGCCuUGGCc -3'
miRNA:   3'- -CG-GUUGCGGUUgcaGUugUGGcACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.