miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26646 3' -57.1 NC_005808.1 + 26320 0.66 0.552342
Target:  5'- aGGCACgGUCuuGaCGCGCACCg--CGAa -3'
miRNA:   3'- cUCGUGgCAGu-C-GUGCGUGGacaGCU- -5'
26646 3' -57.1 NC_005808.1 + 22070 0.66 0.552342
Target:  5'- cGGGuCGCgGUCGGCGCGCGgC--UCGAu -3'
miRNA:   3'- -CUC-GUGgCAGUCGUGCGUgGacAGCU- -5'
26646 3' -57.1 NC_005808.1 + 38896 0.66 0.552342
Target:  5'- -uGCGCCGcauggggCAGCGCGuCGCCggGUgGAu -3'
miRNA:   3'- cuCGUGGCa------GUCGUGC-GUGGa-CAgCU- -5'
26646 3' -57.1 NC_005808.1 + 13289 0.66 0.541488
Target:  5'- cAGCGCCGauugCAGCGCGCcgggGCCggcGUUGu -3'
miRNA:   3'- cUCGUGGCa---GUCGUGCG----UGGa--CAGCu -5'
26646 3' -57.1 NC_005808.1 + 17451 0.66 0.530706
Target:  5'- aAGCGgugCGUCGGCGCGaugcaggcaUACCUGUCGc -3'
miRNA:   3'- cUCGUg--GCAGUCGUGC---------GUGGACAGCu -5'
26646 3' -57.1 NC_005808.1 + 22901 0.66 0.530706
Target:  5'- -cGCGCUGUCGGCugucggcaGCGCGgCgaaGUCGGg -3'
miRNA:   3'- cuCGUGGCAGUCG--------UGCGUgGa--CAGCU- -5'
26646 3' -57.1 NC_005808.1 + 13550 0.66 0.530706
Target:  5'- aGGCGCgGUCGGCAuCGC-CCagGUCa- -3'
miRNA:   3'- cUCGUGgCAGUCGU-GCGuGGa-CAGcu -5'
26646 3' -57.1 NC_005808.1 + 9186 0.66 0.509385
Target:  5'- uGGCGCCGUCG--ACGUugGCCUGcUCGGc -3'
miRNA:   3'- cUCGUGGCAGUcgUGCG--UGGAC-AGCU- -5'
26646 3' -57.1 NC_005808.1 + 35961 0.66 0.49886
Target:  5'- aGGCACaccuuGUCcugGGCGCGCAUCUGcUUGAg -3'
miRNA:   3'- cUCGUGg----CAG---UCGUGCGUGGAC-AGCU- -5'
26646 3' -57.1 NC_005808.1 + 3609 0.66 0.497813
Target:  5'- -uGCGCUGUucggcggCAGCugGCACUacacGUCGAa -3'
miRNA:   3'- cuCGUGGCA-------GUCGugCGUGGa---CAGCU- -5'
26646 3' -57.1 NC_005808.1 + 8663 0.67 0.488433
Target:  5'- -cGCGCgGUCGGCauugcgugccgcGCGCACCUcggcGUUGGu -3'
miRNA:   3'- cuCGUGgCAGUCG------------UGCGUGGA----CAGCU- -5'
26646 3' -57.1 NC_005808.1 + 413 0.67 0.488433
Target:  5'- cAGCACggcggugauCGUCGGC-CGUACCuUGUCGu -3'
miRNA:   3'- cUCGUG---------GCAGUCGuGCGUGG-ACAGCu -5'
26646 3' -57.1 NC_005808.1 + 27853 0.67 0.478109
Target:  5'- cGGCugCG-CGGCGCGCGCUucguguacgUGUcCGAg -3'
miRNA:   3'- cUCGugGCaGUCGUGCGUGG---------ACA-GCU- -5'
26646 3' -57.1 NC_005808.1 + 34020 0.67 0.478109
Target:  5'- -cGCcgugACCGUCGuGU-CGCGCCUGUCGc -3'
miRNA:   3'- cuCG----UGGCAGU-CGuGCGUGGACAGCu -5'
26646 3' -57.1 NC_005808.1 + 27474 0.67 0.467894
Target:  5'- -cGCGCCG-C-GCACGCACCacgCGAg -3'
miRNA:   3'- cuCGUGGCaGuCGUGCGUGGacaGCU- -5'
26646 3' -57.1 NC_005808.1 + 3869 0.67 0.467894
Target:  5'- aGGCGCCGUCgcuguaGGcCGCGCugCcGUCGc -3'
miRNA:   3'- cUCGUGGCAG------UC-GUGCGugGaCAGCu -5'
26646 3' -57.1 NC_005808.1 + 12617 0.67 0.467894
Target:  5'- uGGCGCCGacgcgcUCGGCAuCGCugCUGcCGu -3'
miRNA:   3'- cUCGUGGC------AGUCGU-GCGugGACaGCu -5'
26646 3' -57.1 NC_005808.1 + 23420 0.67 0.457792
Target:  5'- -cGCGCCgGUCAGUGCGaCGCCgGcCGGg -3'
miRNA:   3'- cuCGUGG-CAGUCGUGC-GUGGaCaGCU- -5'
26646 3' -57.1 NC_005808.1 + 5623 0.68 0.42821
Target:  5'- uGGCGCCGUCgauaccguGGCGgGCgACCUGggCGGa -3'
miRNA:   3'- cUCGUGGCAG--------UCGUgCG-UGGACa-GCU- -5'
26646 3' -57.1 NC_005808.1 + 23160 0.68 0.422431
Target:  5'- uGGGCGCCGcCguuggcgucggggcgAGCAUGUACaUGUCGAa -3'
miRNA:   3'- -CUCGUGGCaG---------------UCGUGCGUGgACAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.