miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26647 3' -54.6 NC_005808.1 + 34607 0.77 0.177491
Target:  5'- cACGUcCGACGCCGUGGUgcugcUGCCuGACGAa -3'
miRNA:   3'- -UGUA-GCUGCGGCACCG-----AUGG-UUGCUc -5'
26647 3' -54.6 NC_005808.1 + 5638 0.67 0.593332
Target:  5'- gGCGagGugGCCGUacacGGCggaaACCAGCGGu -3'
miRNA:   3'- -UGUagCugCGGCA----CCGa---UGGUUGCUc -5'
26647 3' -54.6 NC_005808.1 + 36152 0.67 0.638205
Target:  5'- gACggCGACGCCuucgcgggcgGUGGUgucGCgAGCGAGg -3'
miRNA:   3'- -UGuaGCUGCGG----------CACCGa--UGgUUGCUC- -5'
26647 3' -54.6 NC_005808.1 + 5346 0.67 0.649434
Target:  5'- -uGUCGAUGUCGuUGGCgacaGCCAACa-- -3'
miRNA:   3'- ugUAGCUGCGGC-ACCGa---UGGUUGcuc -5'
26647 3' -54.6 NC_005808.1 + 36203 0.66 0.682979
Target:  5'- gACAUCaccgagGGCGCCGcGGCgGCCGACc-- -3'
miRNA:   3'- -UGUAG------CUGCGGCaCCGaUGGUUGcuc -5'
26647 3' -54.6 NC_005808.1 + 18411 0.66 0.682979
Target:  5'- cACGUCGGCGaagGUGGCguuguCCGcCGAGu -3'
miRNA:   3'- -UGUAGCUGCgg-CACCGau---GGUuGCUC- -5'
26647 3' -54.6 NC_005808.1 + 24628 0.66 0.705108
Target:  5'- cACGUCGAa-CCacaUGGCgUGCCGGCGGGc -3'
miRNA:   3'- -UGUAGCUgcGGc--ACCG-AUGGUUGCUC- -5'
26647 3' -54.6 NC_005808.1 + 32658 0.66 0.705108
Target:  5'- --uUCGGCGCCGcgaaGCUGCCcGACGuGa -3'
miRNA:   3'- uguAGCUGCGGCac--CGAUGG-UUGCuC- -5'
26647 3' -54.6 NC_005808.1 + 24802 0.66 0.705108
Target:  5'- cGCGUUGAaguCGCCGUacagcaucuGGCUGCgCAAUGGc -3'
miRNA:   3'- -UGUAGCU---GCGGCA---------CCGAUG-GUUGCUc -5'
26647 3' -54.6 NC_005808.1 + 29927 0.67 0.593332
Target:  5'- cGCAUCagUGCCGUGGCUuGCCAGucAGg -3'
miRNA:   3'- -UGUAGcuGCGGCACCGA-UGGUUgcUC- -5'
26647 3' -54.6 NC_005808.1 + 41880 0.68 0.564418
Target:  5'- gGCGcUCGACuugGCCGUGGCcgacaagaUcaucaagaaaacccaGCCAGCGAGg -3'
miRNA:   3'- -UGU-AGCUG---CGGCACCG--------A---------------UGGUUGCUC- -5'
26647 3' -54.6 NC_005808.1 + 37710 0.76 0.203031
Target:  5'- aACAUCGAaggaCGCaugauugCGUGGCUcGCCGGCGAGg -3'
miRNA:   3'- -UGUAGCU----GCG-------GCACCGA-UGGUUGCUC- -5'
26647 3' -54.6 NC_005808.1 + 14840 0.76 0.203584
Target:  5'- -gGUCGAUGCCGuUGGCgGCCAGCGc- -3'
miRNA:   3'- ugUAGCUGCGGC-ACCGaUGGUUGCuc -5'
26647 3' -54.6 NC_005808.1 + 9856 0.72 0.359628
Target:  5'- gGCGUCGAUGagCGUGGC-ACCGGCGc- -3'
miRNA:   3'- -UGUAGCUGCg-GCACCGaUGGUUGCuc -5'
26647 3' -54.6 NC_005808.1 + 1696 0.71 0.368419
Target:  5'- -aGUCGAgaaauuCGCCGUgGGCcggcgUGCCGGCGAGg -3'
miRNA:   3'- ugUAGCU------GCGGCA-CCG-----AUGGUUGCUC- -5'
26647 3' -54.6 NC_005808.1 + 12007 0.7 0.424173
Target:  5'- cACGUCGGCcagcagcgcgGCCGUGGC---CGGCGAGg -3'
miRNA:   3'- -UGUAGCUG----------CGGCACCGaugGUUGCUC- -5'
26647 3' -54.6 NC_005808.1 + 22008 0.69 0.516434
Target:  5'- uCGUCGGCGCC-UGGCUcgaaauagACCGACu-- -3'
miRNA:   3'- uGUAGCUGCGGcACCGA--------UGGUUGcuc -5'
26647 3' -54.6 NC_005808.1 + 25095 0.69 0.516434
Target:  5'- cGCGccCGGCGCCGUGGgauaCAGCGGGu -3'
miRNA:   3'- -UGUa-GCUGCGGCACCgaugGUUGCUC- -5'
26647 3' -54.6 NC_005808.1 + 21328 0.68 0.544617
Target:  5'- gGC-UUGAUGCCGgccaccgcgcccaGGUUGCCAACGAa -3'
miRNA:   3'- -UGuAGCUGCGGCa------------CCGAUGGUUGCUc -5'
26647 3' -54.6 NC_005808.1 + 17707 0.66 0.694075
Target:  5'- -gAUCGugGCCGUa-CUGCCGcACGAu -3'
miRNA:   3'- ugUAGCugCGGCAccGAUGGU-UGCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.