Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26647 | 3' | -54.6 | NC_005808.1 | + | 1696 | 0.71 | 0.368419 |
Target: 5'- -aGUCGAgaaauuCGCCGUgGGCcggcgUGCCGGCGAGg -3' miRNA: 3'- ugUAGCU------GCGGCA-CCG-----AUGGUUGCUC- -5' |
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26647 | 3' | -54.6 | NC_005808.1 | + | 3240 | 0.67 | 0.593332 |
Target: 5'- cGCAgcgGACGCCG-GGCuUGCCAugcuGCGAu -3' miRNA: 3'- -UGUag-CUGCGGCaCCG-AUGGU----UGCUc -5' |
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26647 | 3' | -54.6 | NC_005808.1 | + | 5346 | 0.67 | 0.649434 |
Target: 5'- -uGUCGAUGUCGuUGGCgacaGCCAACa-- -3' miRNA: 3'- ugUAGCUGCGGC-ACCGa---UGGUUGcuc -5' |
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26647 | 3' | -54.6 | NC_005808.1 | + | 5358 | 0.78 | 0.141903 |
Target: 5'- aAUAUCGACGCCGUGGCcgaCAACGc- -3' miRNA: 3'- -UGUAGCUGCGGCACCGaugGUUGCuc -5' |
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26647 | 3' | -54.6 | NC_005808.1 | + | 5397 | 0.67 | 0.593332 |
Target: 5'- gACAUCGACaG-CGUGGUauccgugGCCGGCGAc -3' miRNA: 3'- -UGUAGCUG-CgGCACCGa------UGGUUGCUc -5' |
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26647 | 3' | -54.6 | NC_005808.1 | + | 5618 | 0.67 | 0.638205 |
Target: 5'- cCGUCGAUaCCGUGGCgggcgACCuggGCGGa -3' miRNA: 3'- uGUAGCUGcGGCACCGa----UGGu--UGCUc -5' |
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26647 | 3' | -54.6 | NC_005808.1 | + | 5638 | 0.67 | 0.593332 |
Target: 5'- gGCGagGugGCCGUacacGGCggaaACCAGCGGu -3' miRNA: 3'- -UGUagCugCGGCA----CCGa---UGGUUGCUc -5' |
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26647 | 3' | -54.6 | NC_005808.1 | + | 5649 | 0.74 | 0.272778 |
Target: 5'- gACAUCGACaCgGUGGCgGCCAGCGu- -3' miRNA: 3'- -UGUAGCUGcGgCACCGaUGGUUGCuc -5' |
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26647 | 3' | -54.6 | NC_005808.1 | + | 5679 | 1.09 | 0.000851 |
Target: 5'- aACAUCGACGCCGUGGCUACCAACGAGg -3' miRNA: 3'- -UGUAGCUGCGGCACCGAUGGUUGCUC- -5' |
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26647 | 3' | -54.6 | NC_005808.1 | + | 8840 | 0.66 | 0.671833 |
Target: 5'- cCAUCGuGCGCCGcGuGCUGCCcgaAGCGGc -3' miRNA: 3'- uGUAGC-UGCGGCaC-CGAUGG---UUGCUc -5' |
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26647 | 3' | -54.6 | NC_005808.1 | + | 9856 | 0.72 | 0.359628 |
Target: 5'- gGCGUCGAUGagCGUGGC-ACCGGCGc- -3' miRNA: 3'- -UGUAGCUGCg-GCACCGaUGGUUGCuc -5' |
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26647 | 3' | -54.6 | NC_005808.1 | + | 12007 | 0.7 | 0.424173 |
Target: 5'- cACGUCGGCcagcagcgcgGCCGUGGC---CGGCGAGg -3' miRNA: 3'- -UGUAGCUG----------CGGCACCGaugGUUGCUC- -5' |
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26647 | 3' | -54.6 | NC_005808.1 | + | 14840 | 0.76 | 0.203584 |
Target: 5'- -gGUCGAUGCCGuUGGCgGCCAGCGc- -3' miRNA: 3'- ugUAGCUGCGGC-ACCGaUGGUUGCuc -5' |
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26647 | 3' | -54.6 | NC_005808.1 | + | 14913 | 0.67 | 0.626969 |
Target: 5'- aGCGUgCGGCGC--UGGCcGCCAACGGc -3' miRNA: 3'- -UGUA-GCUGCGgcACCGaUGGUUGCUc -5' |
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26647 | 3' | -54.6 | NC_005808.1 | + | 15042 | 0.67 | 0.593332 |
Target: 5'- ---cCGACGCCauucUGGCgACCGGCGAc -3' miRNA: 3'- uguaGCUGCGGc---ACCGaUGGUUGCUc -5' |
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26647 | 3' | -54.6 | NC_005808.1 | + | 15921 | 0.68 | 0.56 |
Target: 5'- -gAUCGGCG-CGUGGC-ACCAGCa-- -3' miRNA: 3'- ugUAGCUGCgGCACCGaUGGUUGcuc -5' |
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26647 | 3' | -54.6 | NC_005808.1 | + | 16507 | 0.69 | 0.49516 |
Target: 5'- ---aCGACGCCGUGuucaacGCcGCCGGCGAu -3' miRNA: 3'- uguaGCUGCGGCAC------CGaUGGUUGCUc -5' |
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26647 | 3' | -54.6 | NC_005808.1 | + | 16836 | 0.67 | 0.615739 |
Target: 5'- cCAUCGccuucacguCGCCgGUGGCUacGCCcACGAGc -3' miRNA: 3'- uGUAGCu--------GCGG-CACCGA--UGGuUGCUC- -5' |
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26647 | 3' | -54.6 | NC_005808.1 | + | 17707 | 0.66 | 0.694075 |
Target: 5'- -gAUCGugGCCGUa-CUGCCGcACGAu -3' miRNA: 3'- ugUAGCugCGGCAccGAUGGU-UGCUc -5' |
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26647 | 3' | -54.6 | NC_005808.1 | + | 18411 | 0.66 | 0.682979 |
Target: 5'- cACGUCGGCGaagGUGGCguuguCCGcCGAGu -3' miRNA: 3'- -UGUAGCUGCgg-CACCGau---GGUuGCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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