miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26647 3' -54.6 NC_005808.1 + 41880 0.68 0.564418
Target:  5'- gGCGcUCGACuugGCCGUGGCcgacaagaUcaucaagaaaacccaGCCAGCGAGg -3'
miRNA:   3'- -UGU-AGCUG---CGGCACCG--------A---------------UGGUUGCUC- -5'
26647 3' -54.6 NC_005808.1 + 39820 0.68 0.538066
Target:  5'- cGCAgCGGCGCCa--GC-ACCAGCGAGg -3'
miRNA:   3'- -UGUaGCUGCGGcacCGaUGGUUGCUC- -5'
26647 3' -54.6 NC_005808.1 + 37710 0.76 0.203031
Target:  5'- aACAUCGAaggaCGCaugauugCGUGGCUcGCCGGCGAGg -3'
miRNA:   3'- -UGUAGCU----GCG-------GCACCGA-UGGUUGCUC- -5'
26647 3' -54.6 NC_005808.1 + 36203 0.66 0.682979
Target:  5'- gACAUCaccgagGGCGCCGcGGCgGCCGACc-- -3'
miRNA:   3'- -UGUAG------CUGCGGCaCCGaUGGUUGcuc -5'
26647 3' -54.6 NC_005808.1 + 36152 0.67 0.638205
Target:  5'- gACggCGACGCCuucgcgggcgGUGGUgucGCgAGCGAGg -3'
miRNA:   3'- -UGuaGCUGCGG----------CACCGa--UGgUUGCUC- -5'
26647 3' -54.6 NC_005808.1 + 34607 0.77 0.177491
Target:  5'- cACGUcCGACGCCGUGGUgcugcUGCCuGACGAa -3'
miRNA:   3'- -UGUA-GCUGCGGCACCG-----AUGG-UUGCUc -5'
26647 3' -54.6 NC_005808.1 + 34209 0.66 0.660647
Target:  5'- gAUGUCGGCGUCGaGGUgGCCuGCGAu -3'
miRNA:   3'- -UGUAGCUGCGGCaCCGaUGGuUGCUc -5'
26647 3' -54.6 NC_005808.1 + 32658 0.66 0.705108
Target:  5'- --uUCGGCGCCGcgaaGCUGCCcGACGuGa -3'
miRNA:   3'- uguAGCUGCGGCac--CGAUGG-UUGCuC- -5'
26647 3' -54.6 NC_005808.1 + 29927 0.67 0.593332
Target:  5'- cGCAUCagUGCCGUGGCUuGCCAGucAGg -3'
miRNA:   3'- -UGUAGcuGCGGCACCGA-UGGUUgcUC- -5'
26647 3' -54.6 NC_005808.1 + 28835 0.66 0.682979
Target:  5'- aGCG-CGACGCCGUGcGC-GCCGA-GAa -3'
miRNA:   3'- -UGUaGCUGCGGCAC-CGaUGGUUgCUc -5'
26647 3' -54.6 NC_005808.1 + 28761 0.66 0.69186
Target:  5'- aGCAUCGACcuugugaacgaCGUGGCgcgccgcGCUGGCGAGg -3'
miRNA:   3'- -UGUAGCUGcg---------GCACCGa------UGGUUGCUC- -5'
26647 3' -54.6 NC_005808.1 + 25674 0.7 0.443848
Target:  5'- gACcgCGcCGCCGUGGUUGCCAcuGCcuGGGc -3'
miRNA:   3'- -UGuaGCuGCGGCACCGAUGGU--UG--CUC- -5'
26647 3' -54.6 NC_005808.1 + 25609 0.68 0.582175
Target:  5'- uCAUCGGCuaCGgggGcGCUGCCGGCGGc -3'
miRNA:   3'- uGUAGCUGcgGCa--C-CGAUGGUUGCUc -5'
26647 3' -54.6 NC_005808.1 + 25095 0.69 0.516434
Target:  5'- cGCGccCGGCGCCGUGGgauaCAGCGGGu -3'
miRNA:   3'- -UGUa-GCUGCGGCACCgaugGUUGCUC- -5'
26647 3' -54.6 NC_005808.1 + 24802 0.66 0.705108
Target:  5'- cGCGUUGAaguCGCCGUacagcaucuGGCUGCgCAAUGGc -3'
miRNA:   3'- -UGUAGCU---GCGGCA---------CCGAUG-GUUGCUc -5'
26647 3' -54.6 NC_005808.1 + 24628 0.66 0.705108
Target:  5'- cACGUCGAa-CCacaUGGCgUGCCGGCGGGc -3'
miRNA:   3'- -UGUAGCUgcGGc--ACCG-AUGGUUGCUC- -5'
26647 3' -54.6 NC_005808.1 + 23824 0.67 0.604523
Target:  5'- cGCAUCGGC-CCgGUGGC-GCCGGCa-- -3'
miRNA:   3'- -UGUAGCUGcGG-CACCGaUGGUUGcuc -5'
26647 3' -54.6 NC_005808.1 + 22351 0.73 0.321104
Target:  5'- gACuUCGACGCCGUGGUcuaUcaccauucgcugacgGCCGGCGAa -3'
miRNA:   3'- -UGuAGCUGCGGCACCG---A---------------UGGUUGCUc -5'
26647 3' -54.6 NC_005808.1 + 22008 0.69 0.516434
Target:  5'- uCGUCGGCGCC-UGGCUcgaaauagACCGACu-- -3'
miRNA:   3'- uGUAGCUGCGGcACCGA--------UGGUUGcuc -5'
26647 3' -54.6 NC_005808.1 + 21328 0.68 0.544617
Target:  5'- gGC-UUGAUGCCGgccaccgcgcccaGGUUGCCAACGAa -3'
miRNA:   3'- -UGuAGCUGCGGCa------------CCGAUGGUUGCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.