Results 41 - 60 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26647 | 5' | -60.5 | NC_005808.1 | + | 23713 | 0.67 | 0.299352 |
Target: 5'- aGCGCccaGGUcGCgGGCCAGUGccucggUGGCGCg -3' miRNA: 3'- cUGUG---CCAcCG-CCGGUCGCa-----ACCGCG- -5' |
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26647 | 5' | -60.5 | NC_005808.1 | + | 23819 | 0.75 | 0.087472 |
Target: 5'- cGGCcCGGUGGC-GCCGGCa-UGGCGCu -3' miRNA: 3'- -CUGuGCCACCGcCGGUCGcaACCGCG- -5' |
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26647 | 5' | -60.5 | NC_005808.1 | + | 23970 | 0.68 | 0.292066 |
Target: 5'- cGGCAUGGaaGCcGCgGGCG-UGGCGCa -3' miRNA: 3'- -CUGUGCCacCGcCGgUCGCaACCGCG- -5' |
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26647 | 5' | -60.5 | NC_005808.1 | + | 24741 | 0.68 | 0.277912 |
Target: 5'- gGGCGUGGacGUGGCCcGCGgcgGGCGCg -3' miRNA: 3'- -CUGUGCCacCGCCGGuCGCaa-CCGCG- -5' |
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26647 | 5' | -60.5 | NC_005808.1 | + | 25605 | 0.69 | 0.244927 |
Target: 5'- cGGCuACGGgGGCGcuGCCGGCGgcGGCa- -3' miRNA: 3'- -CUG-UGCCaCCGC--CGGUCGCaaCCGcg -5' |
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26647 | 5' | -60.5 | NC_005808.1 | + | 27434 | 0.66 | 0.354274 |
Target: 5'- -cCGCGcccGGCGGCCgcaGGCccUGGCGCu -3' miRNA: 3'- cuGUGCca-CCGCCGG---UCGcaACCGCG- -5' |
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26647 | 5' | -60.5 | NC_005808.1 | + | 27522 | 0.68 | 0.257062 |
Target: 5'- cGGCGCGcUGGCauaccagcgccagGGCCuGCGgccgccgGGCGCg -3' miRNA: 3'- -CUGUGCcACCG-------------CCGGuCGCaa-----CCGCG- -5' |
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26647 | 5' | -60.5 | NC_005808.1 | + | 27633 | 0.66 | 0.374673 |
Target: 5'- gGGC-CGGUGGuUGGUCGGCaugaaagcuacccagGUgGGCGCc -3' miRNA: 3'- -CUGuGCCACC-GCCGGUCG---------------CAaCCGCG- -5' |
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26647 | 5' | -60.5 | NC_005808.1 | + | 27836 | 0.67 | 0.306778 |
Target: 5'- -cCGCGGUGGC-GCCGGCc---GCGCc -3' miRNA: 3'- cuGUGCCACCGcCGGUCGcaacCGCG- -5' |
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26647 | 5' | -60.5 | NC_005808.1 | + | 28662 | 0.68 | 0.28492 |
Target: 5'- aGAU-CGGUgccGGCGGCCucgccAGCGc-GGCGCg -3' miRNA: 3'- -CUGuGCCA---CCGCCGG-----UCGCaaCCGCG- -5' |
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26647 | 5' | -60.5 | NC_005808.1 | + | 28758 | 0.66 | 0.362677 |
Target: 5'- aGCGCGGUgcgcuucucGGCGcGCaCGGCGUc-GCGCu -3' miRNA: 3'- cUGUGCCA---------CCGC-CG-GUCGCAacCGCG- -5' |
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26647 | 5' | -60.5 | NC_005808.1 | + | 29394 | 0.7 | 0.20428 |
Target: 5'- cGGCGCGGUa--GGCCAGCagaaucuugGGCGCg -3' miRNA: 3'- -CUGUGCCAccgCCGGUCGcaa------CCGCG- -5' |
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26647 | 5' | -60.5 | NC_005808.1 | + | 30204 | 0.8 | 0.039271 |
Target: 5'- cGACGCGGU-GCaGGCCGGCGgcguguucUGGCGCg -3' miRNA: 3'- -CUGUGCCAcCG-CCGGUCGCa-------ACCGCG- -5' |
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26647 | 5' | -60.5 | NC_005808.1 | + | 30675 | 0.66 | 0.379896 |
Target: 5'- cGCugGGUguaGGCGGCgggaauuguCGGUGUugUGGCGg -3' miRNA: 3'- cUGugCCA---CCGCCG---------GUCGCA--ACCGCg -5' |
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26647 | 5' | -60.5 | NC_005808.1 | + | 31098 | 0.67 | 0.306778 |
Target: 5'- cACcuCGGU-GCaGGCCGGCGagUGGUGCg -3' miRNA: 3'- cUGu-GCCAcCG-CCGGUCGCa-ACCGCG- -5' |
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26647 | 5' | -60.5 | NC_005808.1 | + | 32289 | 0.68 | 0.28492 |
Target: 5'- --uGCGGUGGUGGUgAGUucGgacaGGCGCg -3' miRNA: 3'- cugUGCCACCGCCGgUCG--Caa--CCGCG- -5' |
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26647 | 5' | -60.5 | NC_005808.1 | + | 33302 | 0.67 | 0.336274 |
Target: 5'- --aGCGGUGGCcgugccgcgauaGCCAGCGgUGGcCGUg -3' miRNA: 3'- cugUGCCACCGc-----------CGGUCGCaACC-GCG- -5' |
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26647 | 5' | -60.5 | NC_005808.1 | + | 33350 | 0.67 | 0.336274 |
Target: 5'- --aGCGGUGGCcgugccgcgauaGCCAGCGgUGGcCGUg -3' miRNA: 3'- cugUGCCACCGc-----------CGGUCGCaACC-GCG- -5' |
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26647 | 5' | -60.5 | NC_005808.1 | + | 33398 | 0.67 | 0.336274 |
Target: 5'- --aGCGGUGGCcgugccgcgauaGCCAGCGgUGGcCGUg -3' miRNA: 3'- cugUGCCACCGc-----------CGGUCGCaACC-GCG- -5' |
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26647 | 5' | -60.5 | NC_005808.1 | + | 33446 | 0.67 | 0.336274 |
Target: 5'- --aGCGGUGGCcgugccgcgauaGCCAGCGgUGGcCGUg -3' miRNA: 3'- cugUGCCACCGc-----------CGGUCGCaACC-GCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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