miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26647 5' -60.5 NC_005808.1 + 12020 0.67 0.306778
Target:  5'- aGCGCGGccgUGGcCGGCgaggucuugccCAGCGUgucgaagucgaUGGCGCc -3'
miRNA:   3'- cUGUGCC---ACC-GCCG-----------GUCGCA-----------ACCGCG- -5'
26647 5' -60.5 NC_005808.1 + 12740 0.7 0.215258
Target:  5'- uGCugGGUGccGCGcCCAGaCGcUUGGCGCg -3'
miRNA:   3'- cUGugCCAC--CGCcGGUC-GC-AACCGCG- -5'
26647 5' -60.5 NC_005808.1 + 13302 0.68 0.28492
Target:  5'- aGCGCGccGG-GGCCGGCGUUguaggcGGCGUa -3'
miRNA:   3'- cUGUGCcaCCgCCGGUCGCAA------CCGCG- -5'
26647 5' -60.5 NC_005808.1 + 13610 0.66 0.371219
Target:  5'- gGGCAcCGaGUcaGGCGGCCGacaGUUcGGCGCg -3'
miRNA:   3'- -CUGU-GC-CA--CCGCCGGUcg-CAA-CCGCG- -5'
26647 5' -60.5 NC_005808.1 + 14843 0.73 0.1157
Target:  5'- cGAUGCcGuUGGCGGCCAGCGccgcacgcugGGCGCc -3'
miRNA:   3'- -CUGUGcC-ACCGCCGGUCGCaa--------CCGCG- -5'
26647 5' -60.5 NC_005808.1 + 15539 0.69 0.220935
Target:  5'- uGCACGGUGcCGGCCuccaCGUccaggucaaUGGCGCc -3'
miRNA:   3'- cUGUGCCACcGCCGGuc--GCA---------ACCGCG- -5'
26647 5' -60.5 NC_005808.1 + 15875 0.67 0.306778
Target:  5'- uGCGCGGUGGUGGCCgAGgGUaacgaGGaccgGCu -3'
miRNA:   3'- cUGUGCCACCGCCGG-UCgCAa----CCg---CG- -5'
26647 5' -60.5 NC_005808.1 + 16245 0.71 0.178941
Target:  5'- cGGCACGauaUGGCGGauGGCGUUGGCcucGCg -3'
miRNA:   3'- -CUGUGCc--ACCGCCggUCGCAACCG---CG- -5'
26647 5' -60.5 NC_005808.1 + 16581 0.7 0.209707
Target:  5'- cGACGCGccGGacgaGGCCgaccacgcgauGGUGUUGGCGCc -3'
miRNA:   3'- -CUGUGCcaCCg---CCGG-----------UCGCAACCGCG- -5'
26647 5' -60.5 NC_005808.1 + 17092 0.67 0.329896
Target:  5'- cGGCGCGGUucuCGGCCGgGCcUUGGgGCu -3'
miRNA:   3'- -CUGUGCCAcc-GCCGGU-CGcAACCgCG- -5'
26647 5' -60.5 NC_005808.1 + 17589 0.69 0.244927
Target:  5'- aACGCGGUGGCGcGCuauauCAGC-UUGGUGa -3'
miRNA:   3'- cUGUGCCACCGC-CG-----GUCGcAACCGCg -5'
26647 5' -60.5 NC_005808.1 + 18317 0.68 0.28492
Target:  5'- aGACACGGcaguaGCGGCgCAGC-UUGGUGg -3'
miRNA:   3'- -CUGUGCCac---CGCCG-GUCGcAACCGCg -5'
26647 5' -60.5 NC_005808.1 + 18395 0.8 0.038151
Target:  5'- uGGCGcCGGUGGCGGCCacgucGGCGaaggUGGCGUu -3'
miRNA:   3'- -CUGU-GCCACCGCCGG-----UCGCa---ACCGCG- -5'
26647 5' -60.5 NC_005808.1 + 18745 0.66 0.354274
Target:  5'- aGGCcCGcGUGGUguaacaGGCCGGgGgcgGGCGCc -3'
miRNA:   3'- -CUGuGC-CACCG------CCGGUCgCaa-CCGCG- -5'
26647 5' -60.5 NC_005808.1 + 21207 0.71 0.17422
Target:  5'- gGGCGCGGacacGGCGGCCAaGCug-GGCaGCg -3'
miRNA:   3'- -CUGUGCCa---CCGCCGGU-CGcaaCCG-CG- -5'
26647 5' -60.5 NC_005808.1 + 21393 0.66 0.388708
Target:  5'- gGGCGCGGUGGcCGGCaucaAGCccgaaGUGCu -3'
miRNA:   3'- -CUGUGCCACC-GCCGg---UCGcaac-CGCG- -5'
26647 5' -60.5 NC_005808.1 + 21584 0.73 0.122286
Target:  5'- cGGCcacuuCGGUGGCGGUCAucuGCGgauUGGUGCc -3'
miRNA:   3'- -CUGu----GCCACCGCCGGU---CGCa--ACCGCG- -5'
26647 5' -60.5 NC_005808.1 + 21724 0.69 0.226738
Target:  5'- aACGCGGUacGGauGCCAcCGUUgGGCGCg -3'
miRNA:   3'- cUGUGCCA--CCgcCGGUcGCAA-CCGCG- -5'
26647 5' -60.5 NC_005808.1 + 22231 0.71 0.183775
Target:  5'- uGACGCGGcccUGGUugucGGCC-GCGaUGGCGUa -3'
miRNA:   3'- -CUGUGCC---ACCG----CCGGuCGCaACCGCG- -5'
26647 5' -60.5 NC_005808.1 + 23295 0.66 0.379896
Target:  5'- aGGCGCGGUcGGUGGCCgaGGCcgaGGC-Cg -3'
miRNA:   3'- -CUGUGCCA-CCGCCGG--UCGcaaCCGcG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.