Results 1 - 20 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26647 | 5' | -60.5 | NC_005808.1 | + | 212 | 0.71 | 0.17422 |
Target: 5'- cGACACGGcgaacUGGCGcaccUCGGCaUUGGCGCg -3' miRNA: 3'- -CUGUGCC-----ACCGCc---GGUCGcAACCGCG- -5' |
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26647 | 5' | -60.5 | NC_005808.1 | + | 446 | 0.68 | 0.28492 |
Target: 5'- -gUugGGcugcUGcGCGGCCAGCuugcgGGCGCu -3' miRNA: 3'- cuGugCC----AC-CGCCGGUCGcaa--CCGCG- -5' |
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26647 | 5' | -60.5 | NC_005808.1 | + | 1462 | 0.68 | 0.257714 |
Target: 5'- cGGCGCGGUcGGCGGCCuccuggcaGGCcgggguaucgcaGUgcuggucggacaUGGCGCc -3' miRNA: 3'- -CUGUGCCA-CCGCCGG--------UCG------------CA------------ACCGCG- -5' |
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26647 | 5' | -60.5 | NC_005808.1 | + | 1710 | 0.67 | 0.329896 |
Target: 5'- -cCGUGGgccGGCGuGCCGGCGagGGCGUc -3' miRNA: 3'- cuGUGCCa--CCGC-CGGUCGCaaCCGCG- -5' |
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26647 | 5' | -60.5 | NC_005808.1 | + | 3573 | 0.66 | 0.355108 |
Target: 5'- gGGCugGGcguacaccgauccgcGGCcGCCAGUGUUGGcCGUg -3' miRNA: 3'- -CUGugCCa--------------CCGcCGGUCGCAACC-GCG- -5' |
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26647 | 5' | -60.5 | NC_005808.1 | + | 3659 | 0.7 | 0.214697 |
Target: 5'- uACACGGccaacacUGGCGGCC-GCGgaucGGUGUa -3' miRNA: 3'- cUGUGCC-------ACCGCCGGuCGCaa--CCGCG- -5' |
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26647 | 5' | -60.5 | NC_005808.1 | + | 3738 | 0.66 | 0.362677 |
Target: 5'- cACGcCGGUGGUGGgCA-CGUcGGUGCc -3' miRNA: 3'- cUGU-GCCACCGCCgGUcGCAaCCGCG- -5' |
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26647 | 5' | -60.5 | NC_005808.1 | + | 3944 | 0.66 | 0.346009 |
Target: 5'- cGGCgACGGcagcGCGGCCuacAGCGacGGCGCc -3' miRNA: 3'- -CUG-UGCCac--CGCCGG---UCGCaaCCGCG- -5' |
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26647 | 5' | -60.5 | NC_005808.1 | + | 4086 | 0.73 | 0.13282 |
Target: 5'- cGCGCGGcaugacgcUGGUGGCCGGCGcguuuugGGCGg -3' miRNA: 3'- cUGUGCC--------ACCGCCGGUCGCaa-----CCGCg -5' |
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26647 | 5' | -60.5 | NC_005808.1 | + | 4277 | 0.68 | 0.28492 |
Target: 5'- cGGCAUGGUGaUGGCC-GUGUcGGCGg -3' miRNA: 3'- -CUGUGCCACcGCCGGuCGCAaCCGCg -5' |
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26647 | 5' | -60.5 | NC_005808.1 | + | 5599 | 0.74 | 0.109446 |
Target: 5'- cGACcuggGCGGaaccugGGCGGCCGGCGUguccuacgacuuUGGCaGCa -3' miRNA: 3'- -CUG----UGCCa-----CCGCCGGUCGCA------------ACCG-CG- -5' |
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26647 | 5' | -60.5 | NC_005808.1 | + | 5644 | 1.1 | 0.000181 |
Target: 5'- cGACACGGUGGCGGCCAGCGUUGGCGCc -3' miRNA: 3'- -CUGUGCCACCGCCGGUCGCAACCGCG- -5' |
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26647 | 5' | -60.5 | NC_005808.1 | + | 6403 | 0.73 | 0.11895 |
Target: 5'- cGGCcCGGUGuagucGCGGCCcauGuCGUUGGCGCc -3' miRNA: 3'- -CUGuGCCAC-----CGCCGGu--C-GCAACCGCG- -5' |
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26647 | 5' | -60.5 | NC_005808.1 | + | 7482 | 0.7 | 0.209707 |
Target: 5'- aGugGCGGUGGUauaGGCCccuugcaacuGGCGgcGcGCGCu -3' miRNA: 3'- -CugUGCCACCG---CCGG----------UCGCaaC-CGCG- -5' |
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26647 | 5' | -60.5 | NC_005808.1 | + | 8118 | 0.69 | 0.251254 |
Target: 5'- uGCACcgc-GCGGCCGGCGUUGGUuguggGCg -3' miRNA: 3'- cUGUGccacCGCCGGUCGCAACCG-----CG- -5' |
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26647 | 5' | -60.5 | NC_005808.1 | + | 8663 | 0.67 | 0.32205 |
Target: 5'- cGCGCGGUcGGCauugcguGCCgcgcgcaccucGGCGUUGGUGUa -3' miRNA: 3'- cUGUGCCA-CCGc------CGG-----------UCGCAACCGCG- -5' |
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26647 | 5' | -60.5 | NC_005808.1 | + | 9000 | 0.71 | 0.16511 |
Target: 5'- cGCGCGGgGGCGcuuCCAGCaGgcGGCGCa -3' miRNA: 3'- cUGUGCCaCCGCc--GGUCG-CaaCCGCG- -5' |
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26647 | 5' | -60.5 | NC_005808.1 | + | 9303 | 0.66 | 0.379896 |
Target: 5'- uGACuuccuCGGcgaccUGGCGGCgCA-CGUcGGCGCg -3' miRNA: 3'- -CUGu----GCC-----ACCGCCG-GUcGCAaCCGCG- -5' |
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26647 | 5' | -60.5 | NC_005808.1 | + | 10600 | 0.68 | 0.271043 |
Target: 5'- uGCGC-GUGGCGGCggaaAGCGUggccGGCGg -3' miRNA: 3'- cUGUGcCACCGCCGg---UCGCAa---CCGCg -5' |
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26647 | 5' | -60.5 | NC_005808.1 | + | 11407 | 0.66 | 0.389596 |
Target: 5'- -cCAgGGUcuugagcagcGGCGaGCCGGCGUgcaggucgccgauaaGGCGCg -3' miRNA: 3'- cuGUgCCA----------CCGC-CGGUCGCAa--------------CCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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