miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26647 5' -60.5 NC_005808.1 + 40910 0.71 0.160718
Target:  5'- --gGCGGUcauGGcCGGCCuGCGccUGGCGCg -3'
miRNA:   3'- cugUGCCA---CC-GCCGGuCGCa-ACCGCG- -5'
26647 5' -60.5 NC_005808.1 + 39669 0.66 0.379896
Target:  5'- cGACGCGGUGuG-GGCCGGCaugGGaauggGCa -3'
miRNA:   3'- -CUGUGCCAC-CgCCGGUCGcaaCCg----CG- -5'
26647 5' -60.5 NC_005808.1 + 39050 0.67 0.329896
Target:  5'- cGGCGCGGuUGGCGGgaCuGCGcgGuGUGCg -3'
miRNA:   3'- -CUGUGCC-ACCGCCg-GuCGCaaC-CGCG- -5'
26647 5' -60.5 NC_005808.1 + 37579 0.7 0.214697
Target:  5'- --uGCGGUuggaacaGGCGGCCggcccAGCGUccggugcggcUGGCGCc -3'
miRNA:   3'- cugUGCCA-------CCGCCGG-----UCGCA----------ACCGCG- -5'
26647 5' -60.5 NC_005808.1 + 37241 0.72 0.152247
Target:  5'- gGGCGCGGUgcaGGCGGCCAcGCa---GCGCg -3'
miRNA:   3'- -CUGUGCCA---CCGCCGGU-CGcaacCGCG- -5'
26647 5' -60.5 NC_005808.1 + 35609 0.67 0.329105
Target:  5'- cGCAUGGccucgGGCGG-CAGCGUcguuugaacaggcUGGCGg -3'
miRNA:   3'- cUGUGCCa----CCGCCgGUCGCA-------------ACCGCg -5'
26647 5' -60.5 NC_005808.1 + 35242 0.69 0.251254
Target:  5'- gGGCAcCGGaUGGcCGGCCAGCaGUUcGGCu- -3'
miRNA:   3'- -CUGU-GCC-ACC-GCCGGUCG-CAA-CCGcg -5'
26647 5' -60.5 NC_005808.1 + 34933 0.74 0.10351
Target:  5'- cGCACGcucGGCGGCCGGCuugcuGUUGGCGa -3'
miRNA:   3'- cUGUGCca-CCGCCGGUCG-----CAACCGCg -5'
26647 5' -60.5 NC_005808.1 + 34209 0.66 0.377279
Target:  5'- cGACACGuG-GGCGGCgauucucgaagauuCGagcGCGgcGGCGCa -3'
miRNA:   3'- -CUGUGC-CaCCGCCG--------------GU---CGCaaCCGCG- -5'
26647 5' -60.5 NC_005808.1 + 34107 0.71 0.183775
Target:  5'- cGCGCcGaUGGCGGgCAGCGacaGGCGCg -3'
miRNA:   3'- cUGUGcC-ACCGCCgGUCGCaa-CCGCG- -5'
26647 5' -60.5 NC_005808.1 + 33727 0.67 0.336274
Target:  5'- --aGCGGUGGCcgugccggauucGCCAGCGgUGGcCGUg -3'
miRNA:   3'- cugUGCCACCGc-----------CGGUCGCaACC-GCG- -5'
26647 5' -60.5 NC_005808.1 + 33680 0.7 0.198975
Target:  5'- --aGCGGUGGCcgugccGCCAGCGgUGGcCGUg -3'
miRNA:   3'- cugUGCCACCGc-----CGGUCGCaACC-GCG- -5'
26647 5' -60.5 NC_005808.1 + 33638 0.67 0.336274
Target:  5'- --aGCGGUGGCcgugccgcgauaGCCAGCGgUGGcCGUg -3'
miRNA:   3'- cugUGCCACCGc-----------CGGUCGCaACC-GCG- -5'
26647 5' -60.5 NC_005808.1 + 33605 0.69 0.220361
Target:  5'- cGGCACGGccaccgcUGGCGGCaCGGCcaccgcUGGCGa -3'
miRNA:   3'- -CUGUGCC-------ACCGCCG-GUCGca----ACCGCg -5'
26647 5' -60.5 NC_005808.1 + 33590 0.67 0.336274
Target:  5'- --aGCGGUGGCcgugccgcgauaGCCAGCGgUGGcCGUg -3'
miRNA:   3'- cugUGCCACCGc-----------CGGUCGCaACC-GCG- -5'
26647 5' -60.5 NC_005808.1 + 33542 0.67 0.336274
Target:  5'- --aGCGGUGGCcgugccgcgauaGCCAGCGgUGGcCGUg -3'
miRNA:   3'- cugUGCCACCGc-----------CGGUCGCaACC-GCG- -5'
26647 5' -60.5 NC_005808.1 + 33494 0.67 0.336274
Target:  5'- --aGCGGUGGCcgugccgcgauaGCCAGCGgUGGcCGUg -3'
miRNA:   3'- cugUGCCACCGc-----------CGGUCGCaACC-GCG- -5'
26647 5' -60.5 NC_005808.1 + 33446 0.67 0.336274
Target:  5'- --aGCGGUGGCcgugccgcgauaGCCAGCGgUGGcCGUg -3'
miRNA:   3'- cugUGCCACCGc-----------CGGUCGCaACC-GCG- -5'
26647 5' -60.5 NC_005808.1 + 33398 0.67 0.336274
Target:  5'- --aGCGGUGGCcgugccgcgauaGCCAGCGgUGGcCGUg -3'
miRNA:   3'- cugUGCCACCGc-----------CGGUCGCaACC-GCG- -5'
26647 5' -60.5 NC_005808.1 + 33350 0.67 0.336274
Target:  5'- --aGCGGUGGCcgugccgcgauaGCCAGCGgUGGcCGUg -3'
miRNA:   3'- cugUGCCACCGc-----------CGGUCGCaACC-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.